Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25725 and ABID97_RS25730 are separated by 5 nucleotides ABID97_RS25730 and ABID97_RS25735 overlap by 4 nucleotides ABID97_RS25735 and ABID97_RS25740 are separated by 10 nucleotides
ABID97_RS25725: ABID97_RS25725 - peptide ABC transporter substrate-binding protein, at 64,803 to 66,476
_RS25725
ABID97_RS25730: ABID97_RS25730 - ABC transporter permease, at 66,482 to 67,438
_RS25730
ABID97_RS25735: ABID97_RS25735 - ABC transporter permease, at 67,435 to 68,322
_RS25735
ABID97_RS25740: ABID97_RS25740 - ABC transporter ATP-binding protein, at 68,333 to 69,394
_RS25740
Position (kb) 67
68
69 Strain fitness (log2 ratio) -1
0
1 at 66.942 kb on - strand, within ABID97_RS25730 at 67.121 kb on + strand, within ABID97_RS25730 at 68.125 kb on + strand, within ABID97_RS25735 at 68.126 kb on - strand, within ABID97_RS25735 at 69.086 kb on + strand, within ABID97_RS25740 at 69.087 kb on - strand, within ABID97_RS25740 at 69.087 kb on - strand, within ABID97_RS25740 at 69.087 kb on - strand, within ABID97_RS25740 at 69.087 kb on - strand, within ABID97_RS25740 at 69.087 kb on - strand, within ABID97_RS25740 at 69.087 kb on - strand, within ABID97_RS25740 at 69.150 kb on - strand, within ABID97_RS25740
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 66,942 - ABID97_RS25730 0.48 -0.4 67,121 + ABID97_RS25730 0.67 +0.2 68,125 + ABID97_RS25735 0.78 -0.1 68,126 - ABID97_RS25735 0.78 +0.7 69,086 + ABID97_RS25740 0.71 +0.1 69,087 - ABID97_RS25740 0.71 -0.1 69,087 - ABID97_RS25740 0.71 +0.5 69,087 - ABID97_RS25740 0.71 -0.8 69,087 - ABID97_RS25740 0.71 -0.2 69,087 - ABID97_RS25740 0.71 +0.3 69,087 - ABID97_RS25740 0.71 -0.1 69,150 - ABID97_RS25740 0.77 +0.4
Or see this region's nucleotide sequence