Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21685 and ABID97_RS21690 are separated by 7 nucleotides ABID97_RS21690 and ABID97_RS21695 are separated by 9 nucleotides ABID97_RS21695 and ABID97_RS21700 are separated by 5 nucleotides ABID97_RS21700 and ABID97_RS21705 are separated by 55 nucleotides
ABID97_RS21685: ABID97_RS21685 - YajQ family cyclic di-GMP-binding protein, at 4,485,545 to 4,486,030
_RS21685
ABID97_RS21690: ABID97_RS21690 - retropepsin-like aspartic protease, at 4,486,038 to 4,486,679
_RS21690
ABID97_RS21695: ABID97_RS21695 - RidA family protein, at 4,486,689 to 4,487,042
_RS21695
ABID97_RS21700: ABID97_RS21700 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 4,487,048 to 4,487,683
_RS21700
ABID97_RS21705: ABID97_RS21705 - aminoacyl-tRNA deacylase, at 4,487,739 to 4,488,230
_RS21705
Position (kb) 4486
4487
4488 Strain fitness (log2 ratio) -1
0
1
2 at 4486.458 kb on + strand, within ABID97_RS21690 at 4486.458 kb on + strand, within ABID97_RS21690 at 4486.459 kb on - strand, within ABID97_RS21690 at 4486.459 kb on - strand, within ABID97_RS21690 at 4486.459 kb on - strand, within ABID97_RS21690 at 4486.557 kb on + strand, within ABID97_RS21690 at 4486.557 kb on + strand, within ABID97_RS21690 at 4486.557 kb on + strand, within ABID97_RS21690 at 4486.557 kb on + strand, within ABID97_RS21690 at 4486.557 kb on + strand, within ABID97_RS21690 at 4486.558 kb on - strand, within ABID97_RS21690 at 4486.558 kb on - strand, within ABID97_RS21690 at 4486.558 kb on - strand, within ABID97_RS21690 at 4486.558 kb on - strand, within ABID97_RS21690 at 4486.558 kb on - strand, within ABID97_RS21690 at 4486.558 kb on - strand, within ABID97_RS21690 at 4486.558 kb on - strand, within ABID97_RS21690 at 4486.558 kb on - strand, within ABID97_RS21690 at 4486.558 kb on - strand, within ABID97_RS21690 at 4486.675 kb on - strand at 4487.715 kb on - strand at 4487.715 kb on - strand at 4487.875 kb on + strand, within ABID97_RS21705 at 4487.875 kb on + strand, within ABID97_RS21705 at 4487.875 kb on + strand, within ABID97_RS21705 at 4487.875 kb on + strand, within ABID97_RS21705 at 4487.876 kb on - strand, within ABID97_RS21705 at 4487.876 kb on - strand, within ABID97_RS21705 at 4487.876 kb on - strand, within ABID97_RS21705 at 4487.876 kb on - strand, within ABID97_RS21705 at 4487.876 kb on - strand, within ABID97_RS21705 at 4487.876 kb on - strand, within ABID97_RS21705
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 4,486,458 + ABID97_RS21690 0.65 +0.1 4,486,458 + ABID97_RS21690 0.65 -0.7 4,486,459 - ABID97_RS21690 0.66 -0.4 4,486,459 - ABID97_RS21690 0.66 +0.2 4,486,459 - ABID97_RS21690 0.66 -1.2 4,486,557 + ABID97_RS21690 0.81 -0.4 4,486,557 + ABID97_RS21690 0.81 -0.3 4,486,557 + ABID97_RS21690 0.81 -0.1 4,486,557 + ABID97_RS21690 0.81 -0.3 4,486,557 + ABID97_RS21690 0.81 -0.6 4,486,558 - ABID97_RS21690 0.81 -0.6 4,486,558 - ABID97_RS21690 0.81 -0.1 4,486,558 - ABID97_RS21690 0.81 -0.7 4,486,558 - ABID97_RS21690 0.81 -0.9 4,486,558 - ABID97_RS21690 0.81 -0.1 4,486,558 - ABID97_RS21690 0.81 -0.2 4,486,558 - ABID97_RS21690 0.81 +1.9 4,486,558 - ABID97_RS21690 0.81 -0.5 4,486,558 - ABID97_RS21690 0.81 -0.1 4,486,675 - +0.4 4,487,715 - +0.9 4,487,715 - -0.1 4,487,875 + ABID97_RS21705 0.28 +1.9 4,487,875 + ABID97_RS21705 0.28 -0.0 4,487,875 + ABID97_RS21705 0.28 -0.5 4,487,875 + ABID97_RS21705 0.28 -0.3 4,487,876 - ABID97_RS21705 0.28 -0.3 4,487,876 - ABID97_RS21705 0.28 -0.1 4,487,876 - ABID97_RS21705 0.28 +1.1 4,487,876 - ABID97_RS21705 0.28 -0.3 4,487,876 - ABID97_RS21705 0.28 +0.1 4,487,876 - ABID97_RS21705 0.28 -1.5
Or see this region's nucleotide sequence