Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05090

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05080 and ABID97_RS05085 are separated by 44 nucleotidesABID97_RS05085 and ABID97_RS05090 are separated by 79 nucleotidesABID97_RS05090 and ABID97_RS05095 are separated by 24 nucleotidesABID97_RS05095 and ABID97_RS05100 are separated by 43 nucleotides ABID97_RS05080: ABID97_RS05080 - pentapeptide repeat-containing protein, at 1,074,675 to 1,075,727 _RS05080 ABID97_RS05085: ABID97_RS05085 - hypothetical protein, at 1,075,772 to 1,075,954 _RS05085 ABID97_RS05090: ABID97_RS05090 - DUF3540 domain-containing protein, at 1,076,034 to 1,076,417 _RS05090 ABID97_RS05095: ABID97_RS05095 - DUF4150 domain-containing protein, at 1,076,442 to 1,076,837 _RS05095 ABID97_RS05100: ABID97_RS05100 - type VI secretion system tip protein TssI/VgrG, at 1,076,881 to 1,079,283 _RS05100 Position (kb) 1076 1077Strain fitness (log2 ratio) -1 0 1at 1075.132 kb on - strand, within ABID97_RS05080at 1075.132 kb on - strand, within ABID97_RS05080at 1076.537 kb on + strand, within ABID97_RS05095at 1076.537 kb on + strand, within ABID97_RS05095at 1076.983 kb on + strandat 1076.983 kb on + strandat 1077.358 kb on + strand, within ABID97_RS05100at 1077.359 kb on - strand, within ABID97_RS05100at 1077.398 kb on - strand, within ABID97_RS05100at 1077.398 kb on - strand, within ABID97_RS05100

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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1,075,132 - ABID97_RS05080 0.43 +0.7
1,075,132 - ABID97_RS05080 0.43 +0.2
1,076,537 + ABID97_RS05095 0.24 +0.0
1,076,537 + ABID97_RS05095 0.24 -1.4
1,076,983 + -0.4
1,076,983 + +1.6
1,077,358 + ABID97_RS05100 0.20 -0.1
1,077,359 - ABID97_RS05100 0.20 -0.7
1,077,398 - ABID97_RS05100 0.22 -0.7
1,077,398 - ABID97_RS05100 0.22 +0.1

Or see this region's nucleotide sequence