Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04715 and ABID97_RS04720 are separated by 103 nucleotides ABID97_RS04720 and ABID97_RS04725 are separated by 115 nucleotides ABID97_RS04725 and ABID97_RS04730 overlap by 8 nucleotides
ABID97_RS04715: ABID97_RS04715 - haloacid dehalogenase type II, at 982,975 to 983,652
_RS04715
ABID97_RS04720: ABID97_RS04720 - IclR family transcriptional regulator, at 983,756 to 984,496
_RS04720
ABID97_RS04725: ABID97_RS04725 - hydroxymethylglutaryl-CoA lyase, at 984,612 to 985,550
_RS04725
ABID97_RS04730: ABID97_RS04730 - CaiB/BaiF CoA-transferase family protein, at 985,543 to 986,733
_RS04730
Position (kb) 984
985
986 Strain fitness (log2 ratio) -1
0
1
2
3 at 983.664 kb on - strand at 983.685 kb on + strand at 983.705 kb on + strand at 983.801 kb on + strand at 983.801 kb on + strand at 983.802 kb on - strand at 983.802 kb on - strand at 983.802 kb on - strand at 983.802 kb on - strand at 983.803 kb on + strand at 983.803 kb on + strand at 983.803 kb on + strand at 983.803 kb on + strand at 983.803 kb on + strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.818 kb on - strand at 983.931 kb on + strand, within ABID97_RS04720 at 983.931 kb on + strand, within ABID97_RS04720 at 983.931 kb on + strand, within ABID97_RS04720 at 983.932 kb on - strand, within ABID97_RS04720 at 983.955 kb on + strand, within ABID97_RS04720 at 983.955 kb on + strand, within ABID97_RS04720 at 983.956 kb on - strand, within ABID97_RS04720 at 984.147 kb on + strand, within ABID97_RS04720 at 984.228 kb on + strand, within ABID97_RS04720 at 984.228 kb on + strand, within ABID97_RS04720 at 984.229 kb on - strand, within ABID97_RS04720 at 984.229 kb on - strand, within ABID97_RS04720 at 984.229 kb on - strand, within ABID97_RS04720 at 984.268 kb on - strand, within ABID97_RS04720 at 984.342 kb on + strand, within ABID97_RS04720 at 984.343 kb on - strand, within ABID97_RS04720 at 984.343 kb on - strand, within ABID97_RS04720 at 984.584 kb on + strand at 984.584 kb on + strand at 984.584 kb on + strand at 985.158 kb on + strand, within ABID97_RS04725 at 985.159 kb on - strand, within ABID97_RS04725 at 985.338 kb on + strand, within ABID97_RS04725 at 985.338 kb on + strand, within ABID97_RS04725 at 985.338 kb on + strand, within ABID97_RS04725 at 985.339 kb on - strand, within ABID97_RS04725 at 985.568 kb on - strand at 985.864 kb on + strand, within ABID97_RS04730 at 985.901 kb on - strand, within ABID97_RS04730 at 985.901 kb on - strand, within ABID97_RS04730 at 985.934 kb on - strand, within ABID97_RS04730 at 985.987 kb on + strand, within ABID97_RS04730 at 985.987 kb on + strand, within ABID97_RS04730 at 985.987 kb on + strand, within ABID97_RS04730 at 986.236 kb on + strand, within ABID97_RS04730 at 986.236 kb on + strand, within ABID97_RS04730
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 983,664 - +0.2 983,685 + +0.3 983,705 + +0.9 983,801 + +0.2 983,801 + -0.2 983,802 - +0.3 983,802 - +0.4 983,802 - -0.1 983,802 - +0.5 983,803 + +0.8 983,803 + +0.1 983,803 + +0.3 983,803 + +0.4 983,803 + -1.0 983,804 - +1.3 983,804 - -0.4 983,804 - -0.4 983,804 - -0.2 983,804 - +0.2 983,804 - +0.3 983,804 - -0.0 983,804 - -0.0 983,818 - +0.9 983,931 + ABID97_RS04720 0.24 +0.6 983,931 + ABID97_RS04720 0.24 +1.1 983,931 + ABID97_RS04720 0.24 -0.0 983,932 - ABID97_RS04720 0.24 +1.0 983,955 + ABID97_RS04720 0.27 +0.2 983,955 + ABID97_RS04720 0.27 +0.6 983,956 - ABID97_RS04720 0.27 +0.4 984,147 + ABID97_RS04720 0.53 +0.2 984,228 + ABID97_RS04720 0.64 +0.4 984,228 + ABID97_RS04720 0.64 +0.1 984,229 - ABID97_RS04720 0.64 +0.5 984,229 - ABID97_RS04720 0.64 +0.0 984,229 - ABID97_RS04720 0.64 +0.1 984,268 - ABID97_RS04720 0.69 +0.5 984,342 + ABID97_RS04720 0.79 +2.8 984,343 - ABID97_RS04720 0.79 -0.2 984,343 - ABID97_RS04720 0.79 +0.4 984,584 + +0.4 984,584 + +0.4 984,584 + -0.4 985,158 + ABID97_RS04725 0.58 +0.3 985,159 - ABID97_RS04725 0.58 +0.1 985,338 + ABID97_RS04725 0.77 -0.0 985,338 + ABID97_RS04725 0.77 -0.2 985,338 + ABID97_RS04725 0.77 +0.3 985,339 - ABID97_RS04725 0.77 -1.2 985,568 - +1.1 985,864 + ABID97_RS04730 0.27 +0.3 985,901 - ABID97_RS04730 0.30 +0.2 985,901 - ABID97_RS04730 0.30 +0.2 985,934 - ABID97_RS04730 0.33 +1.2 985,987 + ABID97_RS04730 0.37 +0.9 985,987 + ABID97_RS04730 0.37 -0.2 985,987 + ABID97_RS04730 0.37 -0.4 986,236 + ABID97_RS04730 0.58 -0.1 986,236 + ABID97_RS04730 0.58 +1.0
Or see this region's nucleotide sequence