Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03880 and ABID97_RS03885 overlap by 4 nucleotides ABID97_RS03885 and ABID97_RS03890 are separated by 7 nucleotides
ABID97_RS03880: ABID97_RS03880 - formamidase, at 795,740 to 796,744
_RS03880
ABID97_RS03885: ABID97_RS03885 - isochorismatase family cysteine hydrolase, at 796,741 to 797,442
_RS03885
ABID97_RS03890: ABID97_RS03890 - ABC transporter ATP-binding protein, at 797,450 to 799,045
_RS03890
Position (kb) 796
797
798 Strain fitness (log2 ratio) -1
0
1
2 at 796.115 kb on + strand, within ABID97_RS03880 at 796.116 kb on - strand, within ABID97_RS03880 at 796.119 kb on - strand, within ABID97_RS03880 at 796.119 kb on - strand, within ABID97_RS03880 at 796.265 kb on + strand, within ABID97_RS03880 at 796.265 kb on + strand, within ABID97_RS03880 at 796.266 kb on - strand, within ABID97_RS03880 at 796.266 kb on - strand, within ABID97_RS03880 at 796.556 kb on + strand, within ABID97_RS03880 at 796.557 kb on - strand, within ABID97_RS03880 at 796.566 kb on - strand, within ABID97_RS03880 at 796.614 kb on - strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.620 kb on - strand, within ABID97_RS03880 at 796.721 kb on + strand at 796.781 kb on - strand at 796.792 kb on + strand at 796.889 kb on - strand, within ABID97_RS03885 at 797.185 kb on + strand, within ABID97_RS03885 at 797.185 kb on + strand, within ABID97_RS03885 at 797.186 kb on - strand, within ABID97_RS03885 at 797.186 kb on - strand, within ABID97_RS03885 at 797.516 kb on + strand at 797.516 kb on + strand at 797.516 kb on + strand at 797.517 kb on - strand at 797.517 kb on - strand at 797.747 kb on + strand, within ABID97_RS03890 at 797.748 kb on - strand, within ABID97_RS03890 at 797.957 kb on + strand, within ABID97_RS03890 at 798.110 kb on + strand, within ABID97_RS03890 at 798.110 kb on + strand, within ABID97_RS03890 at 798.110 kb on + strand, within ABID97_RS03890 at 798.110 kb on + strand, within ABID97_RS03890 at 798.111 kb on - strand, within ABID97_RS03890 at 798.111 kb on - strand, within ABID97_RS03890 at 798.111 kb on - strand, within ABID97_RS03890
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 796,115 + ABID97_RS03880 0.37 +0.1 796,116 - ABID97_RS03880 0.37 +0.1 796,119 - ABID97_RS03880 0.38 +0.1 796,119 - ABID97_RS03880 0.38 -0.2 796,265 + ABID97_RS03880 0.52 -0.2 796,265 + ABID97_RS03880 0.52 +0.8 796,266 - ABID97_RS03880 0.52 +0.0 796,266 - ABID97_RS03880 0.52 +1.7 796,556 + ABID97_RS03880 0.81 -0.7 796,557 - ABID97_RS03880 0.81 +1.1 796,566 - ABID97_RS03880 0.82 -1.0 796,614 - ABID97_RS03880 0.87 -0.4 796,619 + ABID97_RS03880 0.87 +0.0 796,619 + ABID97_RS03880 0.87 -0.3 796,619 + ABID97_RS03880 0.87 -0.2 796,619 + ABID97_RS03880 0.87 +0.1 796,619 + ABID97_RS03880 0.87 +0.3 796,619 + ABID97_RS03880 0.87 +0.4 796,619 + ABID97_RS03880 0.87 +0.5 796,620 - ABID97_RS03880 0.88 -0.4 796,721 + -0.5 796,781 - +0.8 796,792 + +0.3 796,889 - ABID97_RS03885 0.21 -0.9 797,185 + ABID97_RS03885 0.63 +0.2 797,185 + ABID97_RS03885 0.63 +0.8 797,186 - ABID97_RS03885 0.63 +0.3 797,186 - ABID97_RS03885 0.63 -0.5 797,516 + -0.5 797,516 + -0.2 797,516 + +0.4 797,517 - +0.0 797,517 - +0.5 797,747 + ABID97_RS03890 0.19 +2.2 797,748 - ABID97_RS03890 0.19 -0.8 797,957 + ABID97_RS03890 0.32 -1.4 798,110 + ABID97_RS03890 0.41 -1.5 798,110 + ABID97_RS03890 0.41 -0.3 798,110 + ABID97_RS03890 0.41 -0.1 798,110 + ABID97_RS03890 0.41 -0.1 798,111 - ABID97_RS03890 0.41 +1.4 798,111 - ABID97_RS03890 0.41 +0.1 798,111 - ABID97_RS03890 0.41 +0.6
Or see this region's nucleotide sequence