Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01270 and ABID97_RS01275 are separated by 51 nucleotides ABID97_RS01275 and ABID97_RS01280 are separated by 124 nucleotides ABID97_RS01280 and ABID97_RS01285 are separated by 37 nucleotides
ABID97_RS01270: ABID97_RS01270 - ABC transporter substrate-binding protein, at 260,007 to 261,137
_RS01270
ABID97_RS01275: ABID97_RS01275 - tripartite tricarboxylate transporter substrate binding protein, at 261,189 to 262,127
_RS01275
ABID97_RS01280: ABID97_RS01280 - flavodoxin family protein, at 262,252 to 262,839
_RS01280
ABID97_RS01285: ABID97_RS01285 - fumarylacetoacetate hydrolase family protein, at 262,877 to 263,782
_RS01285
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1 at 260.215 kb on + strand, within ABID97_RS01270 at 260.216 kb on - strand, within ABID97_RS01270 at 260.299 kb on + strand, within ABID97_RS01270 at 260.310 kb on + strand, within ABID97_RS01270 at 260.412 kb on - strand, within ABID97_RS01270 at 260.418 kb on + strand, within ABID97_RS01270 at 260.424 kb on + strand, within ABID97_RS01270 at 261.251 kb on + strand at 261.252 kb on - strand at 261.252 kb on - strand at 261.470 kb on - strand, within ABID97_RS01275 at 261.470 kb on - strand, within ABID97_RS01275 at 261.613 kb on + strand, within ABID97_RS01275 at 261.613 kb on + strand, within ABID97_RS01275 at 261.614 kb on - strand, within ABID97_RS01275 at 261.700 kb on + strand, within ABID97_RS01275 at 261.700 kb on + strand, within ABID97_RS01275 at 261.758 kb on - strand, within ABID97_RS01275 at 261.791 kb on - strand, within ABID97_RS01275 at 261.866 kb on - strand, within ABID97_RS01275 at 262.422 kb on - strand, within ABID97_RS01280 at 262.608 kb on - strand, within ABID97_RS01280 at 262.893 kb on + strand at 262.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 260,215 + ABID97_RS01270 0.18 -0.9 260,216 - ABID97_RS01270 0.18 +0.1 260,299 + ABID97_RS01270 0.26 -0.4 260,310 + ABID97_RS01270 0.27 -0.2 260,412 - ABID97_RS01270 0.36 -0.0 260,418 + ABID97_RS01270 0.36 -0.2 260,424 + ABID97_RS01270 0.37 +0.5 261,251 + -0.3 261,252 - +0.1 261,252 - -0.8 261,470 - ABID97_RS01275 0.30 -0.3 261,470 - ABID97_RS01275 0.30 -0.1 261,613 + ABID97_RS01275 0.45 +0.5 261,613 + ABID97_RS01275 0.45 +0.3 261,614 - ABID97_RS01275 0.45 -0.5 261,700 + ABID97_RS01275 0.54 -0.5 261,700 + ABID97_RS01275 0.54 -0.5 261,758 - ABID97_RS01275 0.61 -1.0 261,791 - ABID97_RS01275 0.64 -0.7 261,866 - ABID97_RS01275 0.72 -0.0 262,422 - ABID97_RS01280 0.29 +0.2 262,608 - ABID97_RS01280 0.61 +1.2 262,893 + +0.4 262,894 - -2.1
Or see this region's nucleotide sequence