Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00040

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00030 and ABID97_RS00035 are separated by 64 nucleotidesABID97_RS00035 and ABID97_RS00040 overlap by 4 nucleotidesABID97_RS00040 and ABID97_RS00045 are separated by 22 nucleotides ABID97_RS00030: ABID97_RS00030 - TraB/GumN family protein, at 7,744 to 8,940 _RS00030 ABID97_RS00035: ABID97_RS00035 - VOC family protein, at 9,005 to 9,418 _RS00035 ABID97_RS00040: ABID97_RS00040 - hypothetical protein, at 9,415 to 10,593 _RS00040 ABID97_RS00045: ABID97_RS00045 - tripartite tricarboxylate transporter substrate binding protein, at 10,616 to 11,590 _RS00045 Position (kb) 9 10 11Strain fitness (log2 ratio) -1 0 1 2 3at 8.933 kb on - strandat 9.065 kb on + strand, within ABID97_RS00035at 9.065 kb on + strand, within ABID97_RS00035at 9.407 kb on + strandat 9.407 kb on + strandat 9.408 kb on - strandat 9.408 kb on - strandat 9.679 kb on + strand, within ABID97_RS00040at 9.680 kb on - strand, within ABID97_RS00040at 9.826 kb on + strand, within ABID97_RS00040at 9.827 kb on - strand, within ABID97_RS00040at 10.048 kb on + strand, within ABID97_RS00040at 10.049 kb on - strand, within ABID97_RS00040at 10.049 kb on - strand, within ABID97_RS00040at 10.049 kb on - strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.300 kb on + strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.301 kb on - strand, within ABID97_RS00040at 10.303 kb on + strand, within ABID97_RS00040at 10.303 kb on + strand, within ABID97_RS00040at 10.303 kb on + strand, within ABID97_RS00040at 10.303 kb on + strand, within ABID97_RS00040at 10.303 kb on + strand, within ABID97_RS00040at 10.304 kb on - strand, within ABID97_RS00040at 10.304 kb on - strand, within ABID97_RS00040at 10.381 kb on + strand, within ABID97_RS00040at 10.591 kb on + strandat 10.591 kb on + strandat 10.591 kb on + strandat 10.591 kb on + strandat 10.592 kb on - strandat 10.592 kb on - strandat 10.592 kb on - strandat 10.592 kb on - strandat 10.853 kb on - strand, within ABID97_RS00045at 10.853 kb on - strand, within ABID97_RS00045at 11.124 kb on + strand, within ABID97_RS00045at 11.124 kb on + strand, within ABID97_RS00045at 11.125 kb on - strand, within ABID97_RS00045at 11.125 kb on - strandat 11.125 kb on - strand, within ABID97_RS00045at 11.125 kb on - strand, within ABID97_RS00045at 11.155 kb on - strand, within ABID97_RS00045at 11.155 kb on - strand, within ABID97_RS00045at 11.155 kb on - strand, within ABID97_RS00045at 11.155 kb on - strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.238 kb on + strand, within ABID97_RS00045at 11.239 kb on - strand, within ABID97_RS00045at 11.239 kb on - strand, within ABID97_RS00045at 11.239 kb on - strand, within ABID97_RS00045at 11.239 kb on - strand, within ABID97_RS00045at 11.326 kb on + strand, within ABID97_RS00045at 11.326 kb on + strand, within ABID97_RS00045at 11.326 kb on + strand, within ABID97_RS00045at 11.326 kb on + strand, within ABID97_RS00045at 11.327 kb on - strand, within ABID97_RS00045at 11.327 kb on - strand, within ABID97_RS00045at 11.328 kb on + strand, within ABID97_RS00045at 11.511 kb on + strandat 11.512 kb on - strandat 11.512 kb on - strandat 11.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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8,933 - -1.0
9,065 + ABID97_RS00035 0.14 -0.1
9,065 + ABID97_RS00035 0.14 -0.1
9,407 + -0.1
9,407 + +0.0
9,408 - +0.1
9,408 - +1.0
9,679 + ABID97_RS00040 0.22 -0.4
9,680 - ABID97_RS00040 0.22 +1.0
9,826 + ABID97_RS00040 0.35 +0.3
9,827 - ABID97_RS00040 0.35 +1.1
10,048 + ABID97_RS00040 0.54 -0.7
10,049 - ABID97_RS00040 0.54 +1.3
10,049 - ABID97_RS00040 0.54 +0.1
10,049 - ABID97_RS00040 0.54 -0.1
10,300 + ABID97_RS00040 0.75 -0.2
10,300 + ABID97_RS00040 0.75 +0.5
10,300 + ABID97_RS00040 0.75 +0.3
10,300 + ABID97_RS00040 0.75 +0.0
10,300 + ABID97_RS00040 0.75 -0.5
10,300 + ABID97_RS00040 0.75 -0.8
10,300 + ABID97_RS00040 0.75 +0.5
10,301 - ABID97_RS00040 0.75 +1.3
10,301 - ABID97_RS00040 0.75 +1.0
10,301 - ABID97_RS00040 0.75 +1.2
10,301 - ABID97_RS00040 0.75 +0.1
10,301 - ABID97_RS00040 0.75 +0.5
10,301 - ABID97_RS00040 0.75 -0.8
10,301 - ABID97_RS00040 0.75 -0.1
10,303 + ABID97_RS00040 0.75 +0.2
10,303 + ABID97_RS00040 0.75 +0.3
10,303 + ABID97_RS00040 0.75 +0.5
10,303 + ABID97_RS00040 0.75 +1.3
10,303 + ABID97_RS00040 0.75 +0.0
10,304 - ABID97_RS00040 0.75 -0.1
10,304 - ABID97_RS00040 0.75 +0.0
10,381 + ABID97_RS00040 0.82 -1.3
10,591 + +0.6
10,591 + +1.2
10,591 + +0.3
10,591 + -0.1
10,592 - +2.0
10,592 - +1.4
10,592 - -0.2
10,592 - -1.2
10,853 - ABID97_RS00045 0.24 -0.2
10,853 - ABID97_RS00045 0.24 +1.2
11,124 + ABID97_RS00045 0.52 -1.2
11,124 + ABID97_RS00045 0.52 -0.0
11,125 - ABID97_RS00045 0.52 -0.4
11,125 - +3.0
11,125 - ABID97_RS00045 0.52 +0.9
11,125 - ABID97_RS00045 0.52 -0.2
11,155 - ABID97_RS00045 0.55 -0.3
11,155 - ABID97_RS00045 0.55 +0.1
11,155 - ABID97_RS00045 0.55 +1.2
11,155 - ABID97_RS00045 0.55 +0.1
11,238 + ABID97_RS00045 0.64 +0.5
11,238 + ABID97_RS00045 0.64 -0.6
11,238 + ABID97_RS00045 0.64 +0.4
11,238 + ABID97_RS00045 0.64 -0.0
11,238 + ABID97_RS00045 0.64 +2.9
11,238 + ABID97_RS00045 0.64 +0.9
11,238 + ABID97_RS00045 0.64 +0.7
11,238 + ABID97_RS00045 0.64 +0.6
11,238 + ABID97_RS00045 0.64 +0.3
11,238 + ABID97_RS00045 0.64 -0.6
11,239 - ABID97_RS00045 0.64 +0.4
11,239 - ABID97_RS00045 0.64 +0.0
11,239 - ABID97_RS00045 0.64 +0.0
11,239 - ABID97_RS00045 0.64 +0.3
11,326 + ABID97_RS00045 0.73 -0.2
11,326 + ABID97_RS00045 0.73 +0.4
11,326 + ABID97_RS00045 0.73 +0.5
11,326 + ABID97_RS00045 0.73 +0.7
11,327 - ABID97_RS00045 0.73 -0.3
11,327 - ABID97_RS00045 0.73 +0.5
11,328 + ABID97_RS00045 0.73 +0.3
11,511 + +0.8
11,512 - +0.2
11,512 - -0.3
11,512 - +0.2

Or see this region's nucleotide sequence