Strain Fitness in Escherichia coli BW25113 around b4395

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrpR and yjjX are separated by 146 nucleotidesyjjX and ytjC are separated by 51 nucleotidesytjC and rob overlap by 4 nucleotides b4393: trpR - Trp operon repressor (NCBI), at 4,630,783 to 4,631,109 trpR b4394: yjjX - orf, hypothetical protein (VIMSS), at 4,631,256 to 4,631,768 yjjX b4395: ytjC - phosphoglycerate mutase (NCBI), at 4,631,820 to 4,632,467 ytjC b4396: rob - DNA-binding transcriptional activator (NCBI), at 4,632,464 to 4,633,333 rob Position (kb) 4631 4632 4633Strain fitness (log2 ratio) -2 -1 0 1 2at 4630.865 kb on - strand, within trpRat 4630.865 kb on - strand, within trpRat 4630.865 kb on - strand, within trpRat 4630.941 kb on - strand, within trpRat 4630.941 kb on - strand, within trpRat 4630.949 kb on + strand, within trpRat 4630.952 kb on - strand, within trpRat 4630.960 kb on + strand, within trpRat 4630.992 kb on + strand, within trpRat 4630.992 kb on + strand, within trpRat 4631.035 kb on + strand, within trpRat 4631.035 kb on + strand, within trpRat 4631.225 kb on + strandat 4631.311 kb on - strand, within yjjXat 4631.311 kb on - strand, within yjjXat 4631.364 kb on - strand, within yjjXat 4631.364 kb on - strand, within yjjXat 4631.520 kb on + strand, within yjjXat 4631.537 kb on - strand, within yjjXat 4631.871 kb on - strandat 4631.878 kb on + strandat 4631.965 kb on + strand, within ytjCat 4631.965 kb on + strand, within ytjCat 4631.991 kb on - strand, within ytjCat 4632.026 kb on - strand, within ytjCat 4632.026 kb on - strand, within ytjCat 4632.026 kb on - strand, within ytjCat 4632.255 kb on + strand, within ytjCat 4632.357 kb on - strand, within ytjCat 4632.357 kb on - strand, within ytjCat 4632.395 kb on + strand, within ytjCat 4632.439 kb on + strandat 4632.439 kb on + strandat 4632.444 kb on + strandat 4632.444 kb on + strandat 4632.447 kb on - strandat 4632.447 kb on - strandat 4632.520 kb on + strandat 4632.520 kb on + strandat 4632.545 kb on - strandat 4632.550 kb on - strandat 4632.567 kb on - strand, within robat 4632.569 kb on - strand, within robat 4632.579 kb on - strand, within robat 4632.583 kb on + strand, within robat 4632.609 kb on - strand, within robat 4632.650 kb on + strand, within robat 4632.664 kb on - strand, within robat 4632.664 kb on - strand, within robat 4632.700 kb on + strand, within robat 4632.708 kb on - strand, within robat 4632.708 kb on - strand, within robat 4632.805 kb on - strand, within robat 4632.883 kb on + strand, within robat 4632.883 kb on + strand, within robat 4632.907 kb on + strand, within robat 4632.910 kb on - strand, within robat 4632.915 kb on - strand, within robat 4632.915 kb on - strand, within robat 4632.931 kb on + strand, within robat 4632.932 kb on + strand, within robat 4633.037 kb on + strand, within robat 4633.037 kb on + strand, within robat 4633.038 kb on - strand, within robat 4633.089 kb on + strand, within robat 4633.089 kb on + strand, within robat 4633.102 kb on - strand, within robat 4633.102 kb on - strand, within robat 4633.193 kb on + strand, within robat 4633.193 kb on + strand, within robat 4633.193 kb on + strand, within robat 4633.227 kb on - strand, within robat 4633.227 kb on - strand, within robat 4633.244 kb on - strand, within robat 4633.274 kb on - strandat 4633.306 kb on - strandat 4633.317 kb on + strandat 4633.364 kb on - strandat 4633.367 kb on + strandat 4633.441 kb on - strandat 4633.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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4,630,865 - trpR b4393 0.25 +0.1
4,630,865 - trpR b4393 0.25 +0.4
4,630,865 - trpR b4393 0.25 +0.1
4,630,941 - trpR b4393 0.48 -1.3
4,630,941 - trpR b4393 0.48 -0.3
4,630,949 + trpR b4393 0.51 -1.5
4,630,952 - trpR b4393 0.52 -0.1
4,630,960 + trpR b4393 0.54 +0.2
4,630,992 + trpR b4393 0.64 +0.5
4,630,992 + trpR b4393 0.64 +0.7
4,631,035 + trpR b4393 0.77 +0.1
4,631,035 + trpR b4393 0.77 -0.5
4,631,225 + +0.0
4,631,311 - yjjX b4394 0.11 +0.5
4,631,311 - yjjX b4394 0.11 +1.9
4,631,364 - yjjX b4394 0.21 +0.6
4,631,364 - yjjX b4394 0.21 +0.2
4,631,520 + yjjX b4394 0.51 +0.1
4,631,537 - yjjX b4394 0.55 -0.1
4,631,871 - -0.3
4,631,878 + +0.1
4,631,965 + ytjC b4395 0.22 -0.6
4,631,965 + ytjC b4395 0.22 -0.3
4,631,991 - ytjC b4395 0.26 -0.8
4,632,026 - ytjC b4395 0.32 +0.7
4,632,026 - ytjC b4395 0.32 +0.3
4,632,026 - ytjC b4395 0.32 -0.0
4,632,255 + ytjC b4395 0.67 -0.2
4,632,357 - ytjC b4395 0.83 +0.2
4,632,357 - ytjC b4395 0.83 -0.7
4,632,395 + ytjC b4395 0.89 +0.3
4,632,439 + -0.1
4,632,439 + +0.4
4,632,444 + +0.4
4,632,444 + +0.7
4,632,447 - +0.5
4,632,447 - -1.3
4,632,520 + +1.0
4,632,520 + -0.4
4,632,545 - +0.4
4,632,550 - +0.8
4,632,567 - rob b4396 0.12 -0.4
4,632,569 - rob b4396 0.12 -0.5
4,632,579 - rob b4396 0.13 +0.8
4,632,583 + rob b4396 0.14 -0.3
4,632,609 - rob b4396 0.17 +0.6
4,632,650 + rob b4396 0.21 -1.0
4,632,664 - rob b4396 0.23 +0.3
4,632,664 - rob b4396 0.23 +0.7
4,632,700 + rob b4396 0.27 -0.0
4,632,708 - rob b4396 0.28 -0.2
4,632,708 - rob b4396 0.28 +0.0
4,632,805 - rob b4396 0.39 +0.5
4,632,883 + rob b4396 0.48 +0.7
4,632,883 + rob b4396 0.48 +0.0
4,632,907 + rob b4396 0.51 -1.0
4,632,910 - rob b4396 0.51 +0.3
4,632,915 - rob b4396 0.52 -0.1
4,632,915 - rob b4396 0.52 +0.2
4,632,931 + rob b4396 0.54 +0.8
4,632,932 + rob b4396 0.54 +0.8
4,633,037 + rob b4396 0.66 -0.1
4,633,037 + rob b4396 0.66 -1.6
4,633,038 - rob b4396 0.66 +0.3
4,633,089 + rob b4396 0.72 -1.7
4,633,089 + rob b4396 0.72 -2.0
4,633,102 - rob b4396 0.73 +0.7
4,633,102 - rob b4396 0.73 +1.0
4,633,193 + rob b4396 0.84 -0.1
4,633,193 + rob b4396 0.84 +0.3
4,633,193 + rob b4396 0.84 -0.5
4,633,227 - rob b4396 0.88 -0.2
4,633,227 - rob b4396 0.88 +0.8
4,633,244 - rob b4396 0.90 +0.4
4,633,274 - +0.0
4,633,306 - +0.0
4,633,317 + +0.4
4,633,364 - -0.6
4,633,367 + -0.5
4,633,441 - +0.0
4,633,445 - -2.0

Or see this region's nucleotide sequence