Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_5118
Experiment: KB with Chloramphenicol 1.55 ug/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Chloramphenicol 1.55 ug/ml |
---|---|---|---|---|---|
remove | |||||
6,074,427 | - | -0.7 | |||
6,074,427 | - | +0.9 | |||
6,074,427 | - | -0.7 | |||
6,074,465 | - | Psyr_5118 | 0.11 | +0.5 | |
6,074,468 | - | Psyr_5118 | 0.11 | -1.2 | |
6,074,468 | - | Psyr_5118 | 0.11 | -0.2 | |
6,074,662 | - | Psyr_5118 | 0.36 | -0.7 | |
6,074,673 | - | Psyr_5118 | 0.38 | +0.3 | |
6,074,673 | - | Psyr_5118 | 0.38 | -1.1 | |
6,074,673 | - | Psyr_5118 | 0.38 | +3.5 | |
6,074,952 | - | Psyr_5118 | 0.74 | +0.2 | |
6,074,952 | - | Psyr_5118 | 0.74 | +0.6 | |
6,074,954 | - | Psyr_5118 | 0.74 | +0.0 | |
6,074,954 | - | Psyr_5118 | 0.74 | -0.5 | |
6,074,954 | - | Psyr_5118 | 0.74 | +0.9 | |
6,074,954 | - | Psyr_5118 | 0.74 | -0.5 | |
6,074,954 | - | Psyr_5118 | 0.74 | +0.0 | |
6,074,954 | - | Psyr_5118 | 0.74 | -1.2 | |
6,074,954 | - | Psyr_5118 | 0.74 | -1.3 | |
6,075,137 | - | -1.1 | |||
6,075,360 | + | -0.1 | |||
6,075,360 | + | +1.7 | |||
6,075,440 | - | -0.2 | |||
6,075,440 | - | -0.2 | |||
6,075,486 | + | +0.0 | |||
6,075,558 | + | -0.5 | |||
6,075,559 | - | -1.4 |
Or see this region's nucleotide sequence