Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_5118

Experiment: KB with Chloramphenicol 1.55 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5117 and Psyr_5118 are separated by 9 nucleotidesPsyr_5118 and Psyr_5119 are separated by 468 nucleotides Psyr_5117: Psyr_5117 - glutamine--fructose-6-phosphate transaminase, at 6,072,539 to 6,074,374 _5117 Psyr_5118: Psyr_5118 - transcriptional regulator, DeoR family, at 6,074,384 to 6,075,151 _5118 Psyr_5119: Psyr_5119 - UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase, at 6,075,620 to 6,076,987 _5119 Position (kb) 6074 6075 6076Strain fitness (log2 ratio) -1 0 1 2 3at 6074.427 kb on - strandat 6074.427 kb on - strandat 6074.427 kb on - strandat 6074.465 kb on - strand, within Psyr_5118at 6074.468 kb on - strand, within Psyr_5118at 6074.468 kb on - strand, within Psyr_5118at 6074.662 kb on - strand, within Psyr_5118at 6074.673 kb on - strand, within Psyr_5118at 6074.673 kb on - strand, within Psyr_5118at 6074.673 kb on - strand, within Psyr_5118at 6074.952 kb on - strand, within Psyr_5118at 6074.952 kb on - strand, within Psyr_5118at 6074.954 kb on - strand, within Psyr_5118at 6074.954 kb on - strand, within Psyr_5118at 6074.954 kb on - strand, within Psyr_5118at 6074.954 kb on - strand, within Psyr_5118at 6074.954 kb on - strand, within Psyr_5118at 6074.954 kb on - strand, within Psyr_5118at 6074.954 kb on - strand, within Psyr_5118at 6075.137 kb on - strandat 6075.360 kb on + strandat 6075.360 kb on + strandat 6075.440 kb on - strandat 6075.440 kb on - strandat 6075.486 kb on + strandat 6075.558 kb on + strandat 6075.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chloramphenicol 1.55 ug/ml
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6,074,427 - -0.7
6,074,427 - +0.9
6,074,427 - -0.7
6,074,465 - Psyr_5118 0.11 +0.5
6,074,468 - Psyr_5118 0.11 -1.2
6,074,468 - Psyr_5118 0.11 -0.2
6,074,662 - Psyr_5118 0.36 -0.7
6,074,673 - Psyr_5118 0.38 +0.3
6,074,673 - Psyr_5118 0.38 -1.1
6,074,673 - Psyr_5118 0.38 +3.5
6,074,952 - Psyr_5118 0.74 +0.2
6,074,952 - Psyr_5118 0.74 +0.6
6,074,954 - Psyr_5118 0.74 +0.0
6,074,954 - Psyr_5118 0.74 -0.5
6,074,954 - Psyr_5118 0.74 +0.9
6,074,954 - Psyr_5118 0.74 -0.5
6,074,954 - Psyr_5118 0.74 +0.0
6,074,954 - Psyr_5118 0.74 -1.2
6,074,954 - Psyr_5118 0.74 -1.3
6,075,137 - -1.1
6,075,360 + -0.1
6,075,360 + +1.7
6,075,440 - -0.2
6,075,440 - -0.2
6,075,486 + +0.0
6,075,558 + -0.5
6,075,559 - -1.4

Or see this region's nucleotide sequence