Experiment: KB with Chloramphenicol 1.55 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0782 and Psyr_0783 overlap by 4 nucleotides Psyr_0783 and Psyr_0784 are separated by 9 nucleotides Psyr_0784 and Psyr_0785 are separated by 36 nucleotides
Psyr_0782: Psyr_0782 - CheD, at 888,963 to 889,496
_0782
Psyr_0783: Psyr_0783 - MCP methyltransferase, CheR-type, at 889,493 to 890,302
_0783
Psyr_0784: Psyr_0784 - CheW-like protein, at 890,312 to 890,851
_0784
Psyr_0785: Psyr_0785 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 890,888 to 892,543
_0785
Position (kb) 890
891 Strain fitness (log2 ratio) -2
-1
0
1 at 889.467 kb on + strand at 889.467 kb on + strand at 889.468 kb on - strand at 889.468 kb on - strand at 889.477 kb on - strand at 889.578 kb on + strand, within Psyr_0783 at 889.578 kb on + strand, within Psyr_0783 at 889.578 kb on + strand, within Psyr_0783 at 889.578 kb on + strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.644 kb on + strand, within Psyr_0783 at 889.644 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.837 kb on + strand, within Psyr_0783 at 889.947 kb on + strand, within Psyr_0783 at 890.064 kb on + strand, within Psyr_0783 at 890.064 kb on + strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.167 kb on - strand, within Psyr_0783 at 890.244 kb on + strand at 890.245 kb on - strand at 890.293 kb on + strand at 890.293 kb on + strand at 891.456 kb on + strand, within Psyr_0785
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 1.55 ug/ml remove 889,467 + +0.4 889,467 + +1.2 889,468 - +0.0 889,468 - +0.0 889,477 - +0.8 889,578 + Psyr_0783 0.10 -0.5 889,578 + Psyr_0783 0.10 +1.0 889,578 + Psyr_0783 0.10 +0.5 889,578 + Psyr_0783 0.10 -0.0 889,579 - Psyr_0783 0.11 -1.0 889,579 - Psyr_0783 0.11 +0.5 889,579 - Psyr_0783 0.11 -0.4 889,579 - Psyr_0783 0.11 -0.7 889,579 - Psyr_0783 0.11 -1.8 889,644 + Psyr_0783 0.19 -0.1 889,644 + Psyr_0783 0.19 +0.2 889,794 + Psyr_0783 0.37 -0.6 889,794 + Psyr_0783 0.37 +0.0 889,794 + Psyr_0783 0.37 -1.0 889,794 + Psyr_0783 0.37 +0.0 889,794 + Psyr_0783 0.37 +0.0 889,795 - Psyr_0783 0.37 -1.6 889,795 - Psyr_0783 0.37 -1.0 889,837 + Psyr_0783 0.42 -0.4 889,947 + Psyr_0783 0.56 -1.3 890,064 + Psyr_0783 0.70 -0.3 890,064 + Psyr_0783 0.70 +1.7 890,065 - Psyr_0783 0.71 -1.1 890,151 + Psyr_0783 0.81 -0.9 890,151 + Psyr_0783 0.81 -0.7 890,151 + Psyr_0783 0.81 -1.1 890,151 + Psyr_0783 0.81 +0.8 890,151 + Psyr_0783 0.81 +1.5 890,151 + Psyr_0783 0.81 +0.5 890,167 - Psyr_0783 0.83 -0.5 890,244 + +0.0 890,245 - -0.6 890,293 + -0.4 890,293 + +0.4 891,456 + Psyr_0785 0.34 +0.1
Or see this region's nucleotide sequence