Experiment: KB with Chloramphenicol 1.55 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0275 and Psyr_0276 are separated by 67 nucleotides Psyr_0276 and Psyr_0277 overlap by 1 nucleotides Psyr_0277 and Psyr_0278 overlap by 8 nucleotides
Psyr_0275: Psyr_0275 - Periplasmic solute binding protein, at 293,509 to 294,450
_0275
Psyr_0276: Psyr_0276 - zinc uptake regulation protein, putative, at 294,518 to 295,000
_0276
Psyr_0277: Psyr_0277 - ABC transporter, at 295,000 to 295,788
_0277
Psyr_0278: Psyr_0278 - ABC-3, at 295,781 to 296,569
_0278
Position (kb) 294
295
296 Strain fitness (log2 ratio) -1
0
1
2 at 293.518 kb on - strand at 293.518 kb on - strand at 293.591 kb on + strand at 293.793 kb on - strand, within Psyr_0275 at 293.793 kb on - strand, within Psyr_0275 at 293.793 kb on - strand, within Psyr_0275 at 293.807 kb on + strand, within Psyr_0275 at 293.834 kb on + strand, within Psyr_0275 at 293.834 kb on + strand, within Psyr_0275 at 293.835 kb on - strand, within Psyr_0275 at 293.835 kb on - strand, within Psyr_0275 at 293.835 kb on - strand, within Psyr_0275 at 293.835 kb on - strand, within Psyr_0275 at 294.219 kb on - strand, within Psyr_0275 at 294.238 kb on + strand, within Psyr_0275 at 294.247 kb on + strand, within Psyr_0275 at 294.269 kb on + strand, within Psyr_0275 at 294.270 kb on - strand, within Psyr_0275 at 294.273 kb on + strand, within Psyr_0275 at 294.273 kb on + strand, within Psyr_0275 at 294.273 kb on + strand, within Psyr_0275 at 294.313 kb on - strand, within Psyr_0275 at 294.328 kb on + strand, within Psyr_0275 at 294.436 kb on + strand at 294.463 kb on + strand at 294.463 kb on + strand at 294.463 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.488 kb on + strand at 294.526 kb on + strand at 294.526 kb on + strand at 294.597 kb on + strand, within Psyr_0276 at 294.598 kb on - strand, within Psyr_0276 at 294.598 kb on - strand, within Psyr_0276 at 294.683 kb on + strand, within Psyr_0276 at 294.683 kb on + strand, within Psyr_0276 at 294.684 kb on - strand, within Psyr_0276 at 294.684 kb on - strand, within Psyr_0276 at 294.684 kb on - strand, within Psyr_0276 at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.017 kb on - strand at 295.017 kb on - strand at 295.214 kb on - strand, within Psyr_0277 at 295.460 kb on + strand, within Psyr_0277 at 295.460 kb on + strand, within Psyr_0277 at 295.460 kb on + strand, within Psyr_0277 at 295.480 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.776 kb on + strand at 295.776 kb on + strand at 295.777 kb on - strand at 295.777 kb on - strand at 295.777 kb on - strand at 295.777 kb on - strand at 295.777 kb on - strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.877 kb on + strand, within Psyr_0278
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 1.55 ug/ml remove 293,518 - +0.5 293,518 - +1.0 293,591 + +0.5 293,793 - Psyr_0275 0.30 +0.3 293,793 - Psyr_0275 0.30 -0.2 293,793 - Psyr_0275 0.30 +0.4 293,807 + Psyr_0275 0.32 -0.7 293,834 + Psyr_0275 0.35 +0.6 293,834 + Psyr_0275 0.35 +0.6 293,835 - Psyr_0275 0.35 +0.3 293,835 - Psyr_0275 0.35 +0.6 293,835 - Psyr_0275 0.35 -0.3 293,835 - Psyr_0275 0.35 -0.3 294,219 - Psyr_0275 0.75 +0.5 294,238 + Psyr_0275 0.77 -0.7 294,247 + Psyr_0275 0.78 -0.6 294,269 + Psyr_0275 0.81 +0.9 294,270 - Psyr_0275 0.81 +0.6 294,273 + Psyr_0275 0.81 -0.7 294,273 + Psyr_0275 0.81 +0.5 294,273 + Psyr_0275 0.81 +0.0 294,313 - Psyr_0275 0.85 +0.6 294,328 + Psyr_0275 0.87 +0.2 294,436 + -0.8 294,463 + +0.2 294,463 + +0.2 294,463 + +0.5 294,485 + +0.3 294,485 + -0.6 294,485 + -0.3 294,485 + -0.6 294,485 + -0.1 294,485 + -0.0 294,485 + +0.1 294,485 + -0.2 294,486 - -0.3 294,486 - +0.0 294,488 + +0.5 294,526 + +0.4 294,526 + +0.2 294,597 + Psyr_0276 0.16 +0.3 294,598 - Psyr_0276 0.17 -1.1 294,598 - Psyr_0276 0.17 -0.5 294,683 + Psyr_0276 0.34 -0.0 294,683 + Psyr_0276 0.34 +0.6 294,684 - Psyr_0276 0.34 -0.3 294,684 - Psyr_0276 0.34 -0.1 294,684 - Psyr_0276 0.34 -1.0 295,016 + -0.1 295,016 + +0.5 295,016 + -0.2 295,016 + +0.3 295,016 + +0.0 295,016 + -1.0 295,016 + +0.5 295,017 - +0.2 295,017 - +0.5 295,214 - Psyr_0277 0.27 -0.2 295,460 + Psyr_0277 0.58 -1.2 295,460 + Psyr_0277 0.58 +0.8 295,460 + Psyr_0277 0.58 +2.4 295,480 + Psyr_0277 0.61 -0.4 295,681 + Psyr_0277 0.86 +1.2 295,681 + Psyr_0277 0.86 +0.9 295,682 - Psyr_0277 0.86 +1.0 295,682 - Psyr_0277 0.86 +1.3 295,682 - Psyr_0277 0.86 -0.2 295,682 - Psyr_0277 0.86 +1.4 295,776 + +0.5 295,776 + -0.8 295,777 - -0.3 295,777 - +0.4 295,777 - -1.0 295,777 - -0.8 295,777 - +0.8 295,799 + -0.8 295,799 + -1.3 295,799 + +0.3 295,799 + -0.5 295,799 + +0.0 295,799 + +0.0 295,799 + +0.8 295,799 + +0.8 295,800 - +0.9 295,800 - -1.4 295,800 - +0.6 295,800 - -0.8 295,800 - +0.4 295,800 - -0.5 295,877 + Psyr_0278 0.12 -0.1
Or see this region's nucleotide sequence