Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0171

Experiment: KB with Chloramphenicol 1.55 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0169 and Psyr_0170 are separated by 177 nucleotidesPsyr_0170 and Psyr_0171 are separated by 167 nucleotidesPsyr_0171 and Psyr_0172 are separated by 16 nucleotidesPsyr_0172 and Psyr_0173 overlap by 4 nucleotides Psyr_0169: Psyr_0169 - Hsp33 protein, at 183,940 to 184,842 _0169 Psyr_0170: Psyr_0170 - heat shock protein Hsp15, at 185,020 to 185,427 _0170 Psyr_0171: Psyr_0171 - EAL, at 185,595 to 186,377 _0171 Psyr_0172: Psyr_0172 - Protein of unknown function DUF785, at 186,394 to 186,870 _0172 Psyr_0173: Psyr_0173 - SSU ribosomal protein S6P modification protein, at 186,867 to 187,772 _0173 Position (kb) 185 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 184.751 kb on + strand, within Psyr_0169at 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.846 kb on + strandat 184.846 kb on + strandat 184.855 kb on + strandat 184.856 kb on - strandat 184.856 kb on - strandat 184.856 kb on - strandat 184.856 kb on - strandat 184.864 kb on + strandat 184.864 kb on + strandat 184.864 kb on + strandat 184.864 kb on + strandat 184.865 kb on - strandat 184.865 kb on - strandat 184.947 kb on + strandat 184.954 kb on + strandat 184.954 kb on + strandat 184.954 kb on + strandat 184.954 kb on + strandat 184.954 kb on + strandat 184.955 kb on - strandat 185.224 kb on + strand, within Psyr_0170at 185.385 kb on + strand, within Psyr_0170at 185.385 kb on + strand, within Psyr_0170at 185.386 kb on - strand, within Psyr_0170at 185.526 kb on + strandat 185.527 kb on - strandat 185.566 kb on + strandat 185.566 kb on + strandat 185.567 kb on - strandat 185.682 kb on + strand, within Psyr_0171at 185.682 kb on + strand, within Psyr_0171at 185.683 kb on - strand, within Psyr_0171at 186.257 kb on + strand, within Psyr_0171at 186.257 kb on + strand, within Psyr_0171at 186.257 kb on + strand, within Psyr_0171at 186.258 kb on - strand, within Psyr_0171at 186.292 kb on + strand, within Psyr_0171at 186.310 kb on - strandat 186.310 kb on - strandat 186.382 kb on + strandat 186.670 kb on + strand, within Psyr_0172at 186.670 kb on + strand, within Psyr_0172at 186.671 kb on - strand, within Psyr_0172at 186.671 kb on - strand, within Psyr_0172at 186.705 kb on + strand, within Psyr_0172at 186.705 kb on + strand, within Psyr_0172at 186.706 kb on - strand, within Psyr_0172at 186.812 kb on + strand, within Psyr_0172at 186.812 kb on + strand, within Psyr_0172at 186.813 kb on - strand, within Psyr_0172at 186.813 kb on - strand, within Psyr_0172at 186.813 kb on - strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.849 kb on + strandat 186.849 kb on + strandat 186.849 kb on + strandat 186.849 kb on + strandat 186.850 kb on - strandat 186.850 kb on - strandat 186.850 kb on - strandat 186.903 kb on + strandat 186.903 kb on + strandat 186.904 kb on - strandat 186.904 kb on - strandat 186.904 kb on - strandat 186.904 kb on - strandat 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.980 kb on + strand, within Psyr_0173at 186.980 kb on + strand, within Psyr_0173at 186.980 kb on + strand, within Psyr_0173at 186.980 kb on + strand, within Psyr_0173at 186.980 kb on + strand, within Psyr_0173at 186.980 kb on + strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 187.080 kb on + strand, within Psyr_0173at 187.081 kb on - strand, within Psyr_0173at 187.081 kb on - strand, within Psyr_0173

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chloramphenicol 1.55 ug/ml
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184,751 + Psyr_0169 0.90 +0.1
184,842 + +0.4
184,842 + -1.5
184,842 + -0.2
184,842 + +0.2
184,842 + +2.1
184,842 + +0.7
184,842 + -0.2
184,842 + -0.9
184,842 + -1.0
184,842 + -2.0
184,843 - -0.2
184,843 - -0.7
184,843 - -0.4
184,843 - -0.0
184,843 - -1.4
184,843 - -2.0
184,843 - -0.5
184,843 - -1.1
184,843 - +0.9
184,843 - -0.5
184,843 - +1.6
184,843 - -0.7
184,846 + -0.7
184,846 + -0.7
184,855 + -1.4
184,856 - +0.2
184,856 - -0.6
184,856 - +0.2
184,856 - -1.6
184,864 + +0.1
184,864 + -0.7
184,864 + -0.4
184,864 + -1.0
184,865 - -0.8
184,865 - +0.4
184,947 + -0.7
184,954 + +0.4
184,954 + -0.0
184,954 + +0.1
184,954 + +0.2
184,954 + -0.1
184,955 - +0.5
185,224 + Psyr_0170 0.50 +0.7
185,385 + Psyr_0170 0.89 +2.0
185,385 + Psyr_0170 0.89 +0.1
185,386 - Psyr_0170 0.90 +0.8
185,526 + -1.1
185,527 - +0.4
185,566 + -0.7
185,566 + +0.2
185,567 - -0.0
185,682 + Psyr_0171 0.11 +0.5
185,682 + Psyr_0171 0.11 -0.5
185,683 - Psyr_0171 0.11 +0.1
186,257 + Psyr_0171 0.85 +1.5
186,257 + Psyr_0171 0.85 -1.7
186,257 + Psyr_0171 0.85 -0.7
186,258 - Psyr_0171 0.85 -1.1
186,292 + Psyr_0171 0.89 +0.1
186,310 - +0.0
186,310 - -2.8
186,382 + -0.9
186,670 + Psyr_0172 0.58 +0.4
186,670 + Psyr_0172 0.58 +1.0
186,671 - Psyr_0172 0.58 +0.1
186,671 - Psyr_0172 0.58 -0.2
186,705 + Psyr_0172 0.65 -0.4
186,705 + Psyr_0172 0.65 +0.3
186,706 - Psyr_0172 0.65 -0.3
186,812 + Psyr_0172 0.88 -2.2
186,812 + Psyr_0172 0.88 -0.8
186,813 - Psyr_0172 0.88 -1.8
186,813 - Psyr_0172 0.88 +0.4
186,813 - Psyr_0172 0.88 +0.3
186,817 + Psyr_0172 0.89 +2.2
186,817 + Psyr_0172 0.89 -1.1
186,817 + Psyr_0172 0.89 +1.0
186,817 + Psyr_0172 0.89 +2.0
186,817 + Psyr_0172 0.89 -1.2
186,817 + Psyr_0172 0.89 -0.3
186,817 + Psyr_0172 0.89 +1.8
186,817 + Psyr_0172 0.89 +0.3
186,817 + Psyr_0172 0.89 -0.0
186,817 + Psyr_0172 0.89 +0.6
186,817 + Psyr_0172 0.89 -1.4
186,818 - Psyr_0172 0.89 +0.6
186,818 - Psyr_0172 0.89 +0.8
186,818 - Psyr_0172 0.89 +0.4
186,818 - Psyr_0172 0.89 +1.6
186,818 - Psyr_0172 0.89 -0.5
186,818 - Psyr_0172 0.89 +0.1
186,818 - Psyr_0172 0.89 +1.1
186,818 - Psyr_0172 0.89 -0.4
186,818 - Psyr_0172 0.89 +0.4
186,821 + Psyr_0172 0.90 -0.4
186,821 + Psyr_0172 0.90 +0.4
186,821 + Psyr_0172 0.90 -0.2
186,821 + Psyr_0172 0.90 -1.3
186,821 + Psyr_0172 0.90 -0.1
186,821 + Psyr_0172 0.90 +0.2
186,822 - Psyr_0172 0.90 -0.5
186,822 - Psyr_0172 0.90 -0.2
186,822 - Psyr_0172 0.90 +0.1
186,822 - Psyr_0172 0.90 +0.0
186,822 - Psyr_0172 0.90 -1.7
186,822 - Psyr_0172 0.90 +0.5
186,822 - Psyr_0172 0.90 -1.0
186,822 - Psyr_0172 0.90 +1.1
186,822 - Psyr_0172 0.90 +0.5
186,822 - Psyr_0172 0.90 +0.9
186,849 + +1.2
186,849 + -1.0
186,849 + -1.5
186,849 + -0.4
186,850 - -0.2
186,850 - -0.5
186,850 - -0.4
186,903 + -0.2
186,903 + -0.1
186,904 - +1.5
186,904 - +0.8
186,904 - +0.3
186,904 - +0.2
186,978 + Psyr_0173 0.12 +0.5
186,978 + Psyr_0173 0.12 +0.4
186,978 + Psyr_0173 0.12 +0.2
186,978 + Psyr_0173 0.12 +1.0
186,978 + Psyr_0173 0.12 +0.6
186,978 + Psyr_0173 0.12 -0.1
186,979 - Psyr_0173 0.12 +2.8
186,979 - Psyr_0173 0.12 +1.4
186,979 - Psyr_0173 0.12 +0.3
186,979 - Psyr_0173 0.12 +0.1
186,979 - Psyr_0173 0.12 -1.3
186,980 + Psyr_0173 0.12 +0.1
186,980 + Psyr_0173 0.12 -0.8
186,980 + Psyr_0173 0.12 +1.5
186,980 + Psyr_0173 0.12 +0.5
186,980 + Psyr_0173 0.12 -0.2
186,980 + Psyr_0173 0.12 +0.7
186,981 - Psyr_0173 0.13 +0.3
186,981 - Psyr_0173 0.13 -0.3
186,981 - Psyr_0173 0.13 +0.5
186,981 - Psyr_0173 0.13 +0.9
186,981 - Psyr_0173 0.13 +0.8
187,080 + Psyr_0173 0.24 +1.2
187,081 - Psyr_0173 0.24 -0.2
187,081 - Psyr_0173 0.24 +1.0

Or see this region's nucleotide sequence