Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS26315

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
5,883,874	+		PFLU_RS26305	0.54	-0.2
5,883,874	+		PFLU_RS26305	0.54	+0.8
5,883,874	+		PFLU_RS26305	0.54	+0.6
5,883,875	-		PFLU_RS26305	0.55	-2.6
5,883,875	-		PFLU_RS26305	0.55	+1.0
5,883,875	-		PFLU_RS26305	0.55	-0.9
5,883,875	-		PFLU_RS26305	0.55	+0.7
5,883,916	+		PFLU_RS26305	0.58	-2.1
5,883,916	+		PFLU_RS26305	0.58	-0.3
5,883,916	+		PFLU_RS26305	0.58	-1.4
5,883,916	+		PFLU_RS26305	0.58	+0.4
5,883,916	+		PFLU_RS26305	0.58	+0.8
5,883,916	+		PFLU_RS26305	0.58	+1.2
5,883,916	+		PFLU_RS26305	0.58	-0.9
5,883,916	+		PFLU_RS26305	0.58	-1.7
5,883,916	+		PFLU_RS26305	0.58	-1.4
5,883,917	-		PFLU_RS26305	0.58	-0.3
5,883,917	-		PFLU_RS26305	0.58	+0.6
5,883,917	-		PFLU_RS26305	0.58	-0.6
5,883,917	-		PFLU_RS26305	0.58	-2.0
5,883,959	+		PFLU_RS26305	0.62	+1.8
5,883,960	-		PFLU_RS26305	0.62	+1.8
5,883,960	-		PFLU_RS26305	0.62	-1.0
5,883,960	-		PFLU_RS26305	0.62	-0.5
5,884,135	+		PFLU_RS26305	0.79	-2.1
5,884,135	+		PFLU_RS26305	0.79	+0.9
5,884,136	-		PFLU_RS26305	0.79	+0.1
5,884,225	+		PFLU_RS26305	0.87	-0.1
5,884,225	+		PFLU_RS26305	0.87	-0.2
5,884,225	+		PFLU_RS26305	0.87	+1.0
5,884,225	+		PFLU_RS26305	0.87	-0.7
5,884,225	+		PFLU_RS26305	0.87	-0.3
5,884,225	+		PFLU_RS26305	0.87	-0.6
5,884,225	+		PFLU_RS26305	0.87	-1.1
5,884,225	+		PFLU_RS26305	0.87	-0.7
5,884,226	-		PFLU_RS26305	0.87	+0.5
5,884,226	-		PFLU_RS26305	0.87	+1.0
5,884,226	-		PFLU_RS26305	0.87	+0.6
5,884,332	+				-1.6
5,884,333	-				-0.9
5,884,333	-				+1.4
5,884,333	-				+0.5
5,884,350	-				-1.8
5,884,350	-				+1.6
5,884,363	+				+0.2
5,884,363	+				+0.8
5,884,486	+		PFLU_RS26310	0.29	-0.1
5,884,486	+		PFLU_RS26310	0.29	+1.4
5,884,486	+		PFLU_RS26310	0.29	+1.3
5,884,487	-		PFLU_RS26310	0.30	-0.6
5,884,487	-		PFLU_RS26310	0.30	+1.9
5,884,487	-		PFLU_RS26310	0.30	-0.1
5,884,645	+		PFLU_RS26310	0.63	+1.0
5,884,645	+		PFLU_RS26310	0.63	-0.3
5,884,645	+		PFLU_RS26310	0.63	+1.0
5,884,645	+		PFLU_RS26310	0.63	+1.3
5,884,645	+		PFLU_RS26310	0.63	-0.2
5,884,645	+		PFLU_RS26310	0.63	-1.2
5,884,646	-		PFLU_RS26310	0.64	-1.1
5,884,646	-		PFLU_RS26310	0.64	-1.6
5,884,646	-		PFLU_RS26310	0.64	-0.2
5,884,695	-		PFLU_RS26310	0.74	-2.1
5,884,695	-		PFLU_RS26310	0.74	-3.1
5,884,718	+		PFLU_RS26310	0.79	-0.8
5,884,719	-		PFLU_RS26310	0.79	-0.1
5,884,784	+				-2.4
5,884,784	+				-0.0
5,884,784	+				-1.6
5,884,785	-				-2.7
5,884,785	-				+0.0
5,884,789	+				+1.0
5,884,789	+				-2.1
5,884,789	+				-1.0
5,884,789	+				-1.9
5,884,789	+				+0.3
5,884,789	+				-0.3
5,884,790	-				+1.4
5,884,790	-				-0.9
5,884,805	-				-0.8
5,884,815	+				-1.4
5,884,815	+				+0.9
5,884,845	+				-1.4
5,884,845	+				-2.8
5,884,845	+				-1.8
5,884,919	+		PFLU_RS26315	0.25	-0.2
5,884,919	+		PFLU_RS26315	0.25	+0.1
5,884,920	-		PFLU_RS26315	0.25	+1.4
5,884,923	+		PFLU_RS26315	0.26	+0.2
5,884,923	+		PFLU_RS26315	0.26	-2.6
5,884,923	+		PFLU_RS26315	0.26	-0.0
5,884,924	-		PFLU_RS26315	0.26	-1.5
5,884,924	-		PFLU_RS26315	0.26	-1.8
5,884,924	-		PFLU_RS26315	0.26	+1.3
5,884,924	-		PFLU_RS26315	0.26	+0.2
5,884,924	-		PFLU_RS26315	0.26	-2.3
5,884,924	-		PFLU_RS26315	0.26	-1.0
5,884,924	-		PFLU_RS26315	0.26	-1.7
5,884,991	-		PFLU_RS26315	0.42	+0.5
5,884,991	-		PFLU_RS26315	0.42	-1.4
5,885,023	+		PFLU_RS26315	0.49	-0.8
5,885,023	+		PFLU_RS26315	0.49	-2.8
5,885,024	-		PFLU_RS26315	0.49	-0.9
5,885,049	+		PFLU_RS26315	0.55	+1.1
5,885,049	+		PFLU_RS26315	0.55	-0.2
5,885,094	+		PFLU_RS26315	0.66	-2.6
5,885,094	+		PFLU_RS26315	0.66	-1.8
5,885,094	+		PFLU_RS26315	0.66	-0.1
5,885,094	+		PFLU_RS26315	0.66	+0.9
5,885,094	+		PFLU_RS26315	0.66	-0.8
5,885,094	+		PFLU_RS26315	0.66	+1.2
5,885,094	+		PFLU_RS26315	0.66	+0.1
5,885,094	+		PFLU_RS26315	0.66	+0.4
5,885,095	-		PFLU_RS26315	0.66	+2.5
5,885,095	-		PFLU_RS26315	0.66	-2.9
5,885,095	-		PFLU_RS26315	0.66	-2.6
5,885,215	+				-2.4
5,885,215	+				-1.7
5,885,215	+				+0.0
5,885,215	+				+0.8
5,885,215	+				+0.3
5,885,215	+				+3.4
5,885,216	-				+2.9
5,885,216	-				+0.1
5,885,216	-				+3.0
5,885,216	-				+2.0
5,885,216	-				-1.4
5,885,216	-				+0.7
5,885,216	-				+1.8
5,885,224	+				+1.3
5,885,224	+				+1.1
5,885,224	+				-0.9
5,885,224	+				-0.6
5,885,224	+				+1.0
5,885,224	+				-1.5
5,885,224	+				-0.6
5,885,225	-				+0.1
5,885,225	-				+0.5
5,885,225	-				+0.6
5,885,225	-				-0.1
5,885,225	-				+1.8
5,885,225	-				-1.8
5,885,232	+				-0.3
5,885,233	-				-1.0
5,885,233	-				-2.0
5,885,274	+				-0.0
5,885,334	+				-1.1
5,885,334	+				+1.4
5,885,334	+				+0.2
5,885,334	+				+0.8
5,885,334	+				-1.1
5,885,334	+				-0.9
5,885,334	+				+0.3
5,885,334	+				-1.0
5,885,334	+				-0.0
5,885,334	+				-0.8
5,885,334	+				+2.1
5,885,334	+				+1.3
5,885,334	+				+1.8
5,885,334	+				+1.3
5,885,335	-				+1.2
5,885,335	-				+2.3
5,885,335	-				+1.2
5,885,335	-				+0.0
5,885,335	-				-1.3
5,885,335	-				+0.2
5,885,335	-				-0.1
5,885,335	-				-0.7
5,885,335	-				-0.0
5,885,335	-				-2.6
5,885,337	+				+0.6
5,885,337	+				-2.5
5,885,337	+				+0.1
5,885,337	+				+1.1
5,885,337	+				-2.0
5,885,337	+				-2.8
5,885,337	+				+1.1
5,885,337	+				-1.7
5,885,337	+				+0.6
5,885,337	+				-0.5
5,885,337	+				+1.8
5,885,337	+				-0.9
5,885,337	+				+1.2
5,885,337	+				-1.3
5,885,338	-				+2.7
5,885,338	-				-0.5
5,885,338	-				-2.7
5,885,338	-				+0.4
5,885,338	-				-0.4
5,885,338	-				+0.5
5,885,338	-				+0.4
5,885,338	-				+0.6
5,885,338	-				-0.7
5,885,338	-				+2.7
5,885,338	-				-2.6
5,885,338	-				-0.1
5,885,338	-				-1.1
5,885,338	-				-0.0
5,885,338	-				+0.6
5,885,338	-				+0.4
5,885,370	-				+0.1
5,885,370	-				+1.1
5,885,395	+				+0.4
5,885,395	+				-0.7
5,885,443	+				-2.5
5,885,444	-				-0.7
5,885,444	-				-2.1
5,885,444	-				-1.6
5,885,444	-				-2.3
5,885,444	-				-3.3
5,885,444	-				+0.2
5,885,470	+				-0.9
5,885,470	+				-1.7
5,885,470	+				+0.2
5,885,470	+				-1.5
5,885,470	+				-1.1
5,885,471	-				-1.1
5,885,617	+		PFLU_RS26320	0.18	-2.0
5,885,618	-		PFLU_RS26320	0.18	-2.4
5,885,707	+		PFLU_RS26320	0.25	+0.2
5,885,708	-		PFLU_RS26320	0.25	-1.8
5,885,708	-		PFLU_RS26320	0.25	+0.3
5,885,812	+		PFLU_RS26320	0.33	+1.1
5,885,812	+		PFLU_RS26320	0.33	-2.7
5,885,812	+		PFLU_RS26320	0.33	+0.9
5,885,812	+		PFLU_RS26320	0.33	+1.1
5,885,813	-		PFLU_RS26320	0.33	-0.8
5,885,813	-		PFLU_RS26320	0.33	-0.8
5,885,813	-		PFLU_RS26320	0.33	-2.1
5,885,813	-		PFLU_RS26320	0.33	-1.9
5,885,813	-		PFLU_RS26320	0.33	-1.1
5,885,824	+		PFLU_RS26320	0.34	-0.2
5,885,824	+		PFLU_RS26320	0.34	-0.3
5,885,824	+		PFLU_RS26320	0.34	+1.9
5,885,824	+		PFLU_RS26320	0.34	+0.9
5,885,824	+		PFLU_RS26320	0.34	-1.4
5,885,824	+		PFLU_RS26320	0.34	+0.2
5,885,825	-		PFLU_RS26320	0.34	-0.0
5,885,825	-		PFLU_RS26320	0.34	+1.3
5,885,825	-		PFLU_RS26320	0.34	-0.3
5,885,866	+		PFLU_RS26320	0.37	+0.3
5,885,866	+		PFLU_RS26320	0.37	-2.2
5,885,866	+		PFLU_RS26320	0.37	+0.9
5,885,866	+		PFLU_RS26320	0.37	+3.9
5,885,867	-		PFLU_RS26320	0.37	+1.0
5,885,914	+		PFLU_RS26320	0.41	-0.6
5,885,915	-		PFLU_RS26320	0.41	-0.0
5,885,915	-		PFLU_RS26320	0.41	+1.2
5,885,915	-		PFLU_RS26320	0.41	+0.5
5,885,915	-		PFLU_RS26320	0.41	+5.9
5,885,922	+		PFLU_RS26320	0.41	-0.4
5,885,922	+		PFLU_RS26320	0.41	+0.2
5,885,922	+		PFLU_RS26320	0.41	+0.6
5,885,923	-		PFLU_RS26320	0.42	-0.0
5,885,923	-		PFLU_RS26320	0.42	+1.2
5,885,923	-		PFLU_RS26320	0.42	+1.4
5,885,948	+		PFLU_RS26320	0.43	+0.9
5,885,948	+		PFLU_RS26320	0.43	+1.1
5,885,948	+		PFLU_RS26320	0.43	+0.8
5,885,948	+		PFLU_RS26320	0.43	+0.2
5,885,948	+		PFLU_RS26320	0.43	+2.1
5,885,948	+		PFLU_RS26320	0.43	-2.3
5,885,948	+		PFLU_RS26320	0.43	-2.3
5,885,949	-		PFLU_RS26320	0.44	-1.5
5,885,949	-		PFLU_RS26320	0.44	+1.9
5,885,949	-		PFLU_RS26320	0.44	+0.1
5,885,949	-		PFLU_RS26320	0.44	-0.8
5,885,949	-		PFLU_RS26320	0.44	-1.4
5,885,960	+		PFLU_RS26320	0.44	-0.7
5,886,230	-		PFLU_RS26320	0.65	-2.1