Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22090

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
4,968,588	+				+3.7
4,968,588	+				-2.3
4,968,588	+				+1.0
4,968,588	+				+1.7
4,968,588	+				+0.1
4,968,589	-				+0.6
4,968,589	-				+0.0
4,968,589	-				-0.9
4,968,589	-				-1.3
4,968,589	-				+1.4
4,968,589	-				+0.3
4,968,589	-				+0.5
4,968,616	+		PFLU_RS22080	0.19	-2.9
4,968,616	+		PFLU_RS22080	0.19	+2.6
4,968,616	+		PFLU_RS22080	0.19	+0.1
4,968,616	+		PFLU_RS22080	0.19	-0.1
4,968,616	+		PFLU_RS22080	0.19	+4.4
4,968,616	+		PFLU_RS22080	0.19	-0.1
4,968,616	+		PFLU_RS22080	0.19	-0.0
4,968,616	+		PFLU_RS22080	0.19	-1.0
4,968,616	+		PFLU_RS22080	0.19	-1.3
4,968,616	+		PFLU_RS22080	0.19	+1.2
4,968,616	+		PFLU_RS22080	0.19	-0.3
4,968,616	+		PFLU_RS22080	0.19	-1.8
4,968,616	+		PFLU_RS22080	0.19	-0.0
4,968,616	+		PFLU_RS22080	0.19	+0.3
4,968,616	+		PFLU_RS22080	0.19	-0.1
4,968,616	+		PFLU_RS22080	0.19	-1.6
4,968,616	+		PFLU_RS22080	0.19	+0.2
4,968,616	+		PFLU_RS22080	0.19	-1.0
4,968,616	+		PFLU_RS22080	0.19	+0.8
4,968,617	-		PFLU_RS22080	0.19	+1.1
4,968,617	-		PFLU_RS22080	0.19	+0.0
4,968,617	-		PFLU_RS22080	0.19	+1.4
4,968,617	-		PFLU_RS22080	0.19	+0.1
4,968,617	-		PFLU_RS22080	0.19	+0.8
4,968,617	-		PFLU_RS22080	0.19	-1.0
4,968,617	-		PFLU_RS22080	0.19	-2.7
4,968,617	-		PFLU_RS22080	0.19	+2.6
4,968,617	-		PFLU_RS22080	0.19	+0.4
4,968,617	-		PFLU_RS22080	0.19	+0.9
4,968,617	-		PFLU_RS22080	0.19	-0.8
4,968,617	-		PFLU_RS22080	0.19	-0.9
4,968,617	-		PFLU_RS22080	0.19	+0.1
4,968,617	-		PFLU_RS22080	0.19	+1.6
4,968,617	-		PFLU_RS22080	0.19	+1.0
4,968,617	-		PFLU_RS22080	0.19	-2.6
4,968,617	-		PFLU_RS22080	0.19	+0.7
4,968,617	-		PFLU_RS22080	0.19	-1.0
4,968,617	-		PFLU_RS22080	0.19	+1.6
4,968,617	-		PFLU_RS22080	0.19	-0.5
4,968,617	-		PFLU_RS22080	0.19	-0.5
4,968,617	-		PFLU_RS22080	0.19	+0.9
4,968,617	-		PFLU_RS22080	0.19	+0.6
4,968,617	-		PFLU_RS22080	0.19	-2.3
4,968,617	-		PFLU_RS22080	0.19	-0.5
4,968,617	-		PFLU_RS22080	0.19	-1.0
4,968,617	-		PFLU_RS22080	0.19	+0.5
4,968,660	+		PFLU_RS22080	0.42	-1.1
4,968,660	+		PFLU_RS22080	0.42	+0.6
4,968,660	+		PFLU_RS22080	0.42	-2.3
4,968,660	+		PFLU_RS22080	0.42	-1.9
4,968,661	-		PFLU_RS22080	0.42	-0.6
4,968,661	-		PFLU_RS22080	0.42	-0.4
4,968,661	-		PFLU_RS22080	0.42	+2.1
4,968,661	-		PFLU_RS22080	0.42	-0.5
4,968,661	-		PFLU_RS22080	0.42	-2.4
4,968,712	+		PFLU_RS22080	0.69	+0.9
4,968,712	+		PFLU_RS22080	0.69	-0.6
4,968,712	+		PFLU_RS22080	0.69	+1.3
4,968,712	+		PFLU_RS22080	0.69	-0.8
4,968,713	-		PFLU_RS22080	0.70	-0.7
4,968,713	-		PFLU_RS22080	0.70	+1.0
4,968,713	-		PFLU_RS22080	0.70	+0.6
4,968,713	-		PFLU_RS22080	0.70	-0.6
4,968,713	-		PFLU_RS22080	0.70	+0.9
4,968,713	-		PFLU_RS22080	0.70	-1.7
4,968,713	-		PFLU_RS22080	0.70	-0.1
4,968,713	-		PFLU_RS22080	0.70	-0.2
4,968,713	-		PFLU_RS22080	0.70	-0.5
4,968,713	-		PFLU_RS22080	0.70	+2.5
4,968,713	-		PFLU_RS22080	0.70	-0.8
4,968,713	-		PFLU_RS22080	0.70	-2.1
4,968,713	-		PFLU_RS22080	0.70	+1.2
4,968,713	-		PFLU_RS22080	0.70	+3.8
4,968,713	-		PFLU_RS22080	0.70	-1.9
4,968,716	+		PFLU_RS22080	0.71	+1.0
4,968,717	-		PFLU_RS22080	0.72	+1.6
4,968,717	-		PFLU_RS22080	0.72	+2.0
4,968,719	-		PFLU_RS22080	0.73	+0.0
4,968,781	-				-0.9
4,968,781	-				+0.1
4,968,970	+				-0.7
4,969,006	+				+2.6
4,969,117	+		PFLU_RS22085	0.27	+0.1
4,969,117	+		PFLU_RS22085	0.27	-0.5
4,969,117	+		PFLU_RS22085	0.27	-0.7
4,969,117	+		PFLU_RS22085	0.27	+0.8
4,969,118	-		PFLU_RS22085	0.27	-1.6
4,969,118	-		PFLU_RS22085	0.27	+1.6
4,969,118	-		PFLU_RS22085	0.27	+0.7
4,969,118	-		PFLU_RS22085	0.27	+0.6
4,969,118	-		PFLU_RS22085	0.27	-0.8
4,969,118	-		PFLU_RS22085	0.27	+1.0
4,969,222	+		PFLU_RS22085	0.46	+0.5
4,969,222	+		PFLU_RS22085	0.46	+1.5
4,969,222	+		PFLU_RS22085	0.46	+0.2
4,969,222	+		PFLU_RS22085	0.46	-1.7
4,969,222	+		PFLU_RS22085	0.46	+0.8
4,969,222	+		PFLU_RS22085	0.46	-2.0
4,969,222	+		PFLU_RS22085	0.46	-0.1
4,969,223	-		PFLU_RS22085	0.47	+1.0
4,969,223	-		PFLU_RS22085	0.47	-2.0
4,969,223	-		PFLU_RS22085	0.47	+0.3
4,969,223	-		PFLU_RS22085	0.47	+0.8
4,969,223	-		PFLU_RS22085	0.47	-1.6
4,969,223	-		PFLU_RS22085	0.47	-1.9
4,969,223	-		PFLU_RS22085	0.47	-0.9
4,969,223	-		PFLU_RS22085	0.47	+0.4
4,969,223	-		PFLU_RS22085	0.47	+0.9
4,969,223	-		PFLU_RS22085	0.47	+2.2
4,969,225	+		PFLU_RS22085	0.47	+0.1
4,969,225	+		PFLU_RS22085	0.47	-0.1
4,969,226	-		PFLU_RS22085	0.47	+4.0
4,969,226	-		PFLU_RS22085	0.47	+3.1
4,969,226	-		PFLU_RS22085	0.47	+1.8
4,969,226	-		PFLU_RS22085	0.47	-2.3
4,969,521	+				+1.1
4,969,521	+				-2.7
4,969,521	+				-0.4
4,969,522	-				-2.0
4,969,522	-				+0.5
4,969,522	-				+0.3
4,969,529	+				-0.2
4,969,529	+				+1.0
4,969,529	+				-2.2
4,969,530	-				-0.2
4,969,530	-				-0.8
4,969,530	-				-0.1
4,969,530	-				+1.5
4,969,530	-				+1.3
4,969,530	-				-1.9
4,969,530	-				+1.8
4,969,530	-				+0.0
4,969,621	+				+1.0
4,969,621	+				+1.1
4,969,622	-				-1.4
4,969,622	-				+2.1
4,969,951	+		PFLU_RS22090	0.49	+0.1
4,969,951	+		PFLU_RS22090	0.49	-0.5
4,969,951	+		PFLU_RS22090	0.49	+1.0
4,969,952	-		PFLU_RS22090	0.49	+1.4
4,969,952	-		PFLU_RS22090	0.49	+0.2
4,969,952	-		PFLU_RS22090	0.49	+0.3
4,970,057	+		PFLU_RS22090	0.62	+1.5
4,970,058	-		PFLU_RS22090	0.62	-2.6
4,970,058	-		PFLU_RS22090	0.62	+0.5
4,970,109	+		PFLU_RS22090	0.68	-0.2
4,970,168	+		PFLU_RS22090	0.75	+1.6
4,970,168	+		PFLU_RS22090	0.75	+1.7
4,970,168	+		PFLU_RS22090	0.75	+0.5
4,970,168	+		PFLU_RS22090	0.75	-0.5
4,970,169	-		PFLU_RS22090	0.75	+1.0
4,970,169	-		PFLU_RS22090	0.75	-2.3
4,970,169	-		PFLU_RS22090	0.75	-0.3
4,970,171	+		PFLU_RS22090	0.76	+1.1
4,970,171	+		PFLU_RS22090	0.76	+0.5
4,970,171	+		PFLU_RS22090	0.76	+1.2
4,970,171	+		PFLU_RS22090	0.76	+0.1
4,970,171	+		PFLU_RS22090	0.76	-0.4
4,970,171	+		PFLU_RS22090	0.76	-2.5
4,970,171	+		PFLU_RS22090	0.76	-0.1
4,970,171	+		PFLU_RS22090	0.76	+1.2
4,970,171	+		PFLU_RS22090	0.76	-0.2
4,970,171	+		PFLU_RS22090	0.76	+0.2
4,970,171	+		PFLU_RS22090	0.76	+0.3
4,970,171	+		PFLU_RS22090	0.76	-0.7
4,970,172	-		PFLU_RS22090	0.76	-1.4
4,970,172	-		PFLU_RS22090	0.76	+2.7
4,970,172	-		PFLU_RS22090	0.76	-0.8
4,970,172	-		PFLU_RS22090	0.76	-1.9
4,970,172	-		PFLU_RS22090	0.76	-0.0
4,970,172	-		PFLU_RS22090	0.76	-0.7
4,970,172	-		PFLU_RS22090	0.76	-0.5
4,970,252	+		PFLU_RS22090	0.85	-1.7
4,970,252	+		PFLU_RS22090	0.85	+0.5
4,970,253	-		PFLU_RS22090	0.85	+3.0
4,970,253	-		PFLU_RS22090	0.85	-1.7
4,970,253	-		PFLU_RS22090	0.85	+0.6
4,970,253	-		PFLU_RS22090	0.85	-0.8
4,970,253	-		PFLU_RS22090	0.85	-1.8
4,970,253	-		PFLU_RS22090	0.85	+1.1
4,970,281	-		PFLU_RS22090	0.89	+1.2
4,970,288	+		PFLU_RS22090	0.90	-0.6
4,970,289	-		PFLU_RS22090	0.90	-0.5
4,970,289	-		PFLU_RS22090	0.90	-1.9
4,970,289	-		PFLU_RS22090	0.90	-1.5
4,970,289	-		PFLU_RS22090	0.90	+0.3
4,970,289	-		PFLU_RS22090	0.90	-1.5
4,970,369	+				-0.6
4,970,369	+				+2.2
4,970,369	+				-0.6
4,970,369	+				-1.1
4,970,369	+				-2.0
4,970,369	+				-0.1
4,970,369	+				+1.9
4,970,370	-				-1.4
4,970,429	+				+1.3
4,970,429	+				+0.5
4,970,429	+				-2.8
4,970,429	+				-1.0
4,970,429	+				-1.9
4,970,429	+				+0.8
4,970,429	+				-2.7
4,970,430	-				+1.1
4,970,430	-				+0.0
4,970,430	-				-0.3
4,970,430	-				-0.7
4,970,568	-				-1.2
4,970,568	-				-1.1
4,970,637	+				-0.5
4,970,654	-				+2.1
4,970,778	-		PFLU_RS22095	0.15	+1.9
4,970,778	-		PFLU_RS22095	0.15	-1.5
4,970,778	-		PFLU_RS22095	0.15	-1.1
4,970,778	-		PFLU_RS22095	0.15	-1.2
4,970,803	+		PFLU_RS22095	0.16	-4.0
4,970,803	+		PFLU_RS22095	0.16	-2.1
4,970,803	+		PFLU_RS22095	0.16	-3.0
4,970,803	+		PFLU_RS22095	0.16	-2.4
4,970,804	-		PFLU_RS22095	0.16	-2.2
4,970,804	-		PFLU_RS22095	0.16	-1.7
4,970,804	-		PFLU_RS22095	0.16	-2.3
4,970,847	+		PFLU_RS22095	0.18	-4.2
4,971,208	+		PFLU_RS22095	0.34	+1.1
4,971,208	+		PFLU_RS22095	0.34	-0.7
4,971,208	+		PFLU_RS22095	0.34	-1.7
4,971,209	-		PFLU_RS22095	0.34	-2.5
4,971,209	-		PFLU_RS22095	0.34	-2.6
4,971,209	-		PFLU_RS22095	0.34	-2.7
4,971,209	-		PFLU_RS22095	0.34	-2.3
4,971,295	+		PFLU_RS22095	0.38	-2.5
4,971,295	+		PFLU_RS22095	0.38	+0.5
4,971,295	+		PFLU_RS22095	0.38	-1.5
4,971,295	+		PFLU_RS22095	0.38	-1.3
4,971,295	+		PFLU_RS22095	0.38	-1.2
4,971,295	+		PFLU_RS22095	0.38	-2.1
4,971,296	-		PFLU_RS22095	0.38	-3.6
4,971,296	-		PFLU_RS22095	0.38	-2.7
4,971,296	-		PFLU_RS22095	0.38	-2.4
4,971,296	-		PFLU_RS22095	0.38	-4.0
4,971,296	-		PFLU_RS22095	0.38	-1.7
4,971,360	+		PFLU_RS22095	0.41	-1.9
4,971,360	+		PFLU_RS22095	0.41	-2.0
4,971,361	-		PFLU_RS22095	0.41	-3.6
4,971,361	-		PFLU_RS22095	0.41	-2.5