Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS20355

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
4,594,304	+		PFLU_RS20350	0.19	-1.7
4,594,304	+		PFLU_RS20350	0.19	-0.2
4,594,305	-		PFLU_RS20350	0.19	-1.2
4,594,305	-		PFLU_RS20350	0.19	-1.2
4,594,305	-		PFLU_RS20350	0.19	+0.6
4,594,344	+		PFLU_RS20350	0.23	+0.4
4,594,349	+		PFLU_RS20350	0.23	+1.1
4,594,349	+		PFLU_RS20350	0.23	-1.5
4,594,349	+		PFLU_RS20350	0.23	-2.1
4,594,349	+		PFLU_RS20350	0.23	-0.4
4,594,350	-		PFLU_RS20350	0.24	+0.9
4,594,350	-		PFLU_RS20350	0.24	+0.3
4,594,350	-		PFLU_RS20350	0.24	-0.5
4,594,350	-		PFLU_RS20350	0.24	-0.2
4,594,373	+		PFLU_RS20350	0.26	-0.9
4,594,373	+		PFLU_RS20350	0.26	+0.1
4,594,373	+		PFLU_RS20350	0.26	+0.0
4,594,374	-		PFLU_RS20350	0.26	+0.9
4,594,374	-		PFLU_RS20350	0.26	-1.7
4,594,374	-		PFLU_RS20350	0.26	-0.7
4,594,374	-		PFLU_RS20350	0.26	-0.0
4,594,374	-		PFLU_RS20350	0.26	+0.1
4,594,457	-		PFLU_RS20350	0.34	-2.5
4,594,457	-		PFLU_RS20350	0.34	-1.4
4,594,484	+		PFLU_RS20350	0.37	+0.3
4,594,484	+		PFLU_RS20350	0.37	+0.2
4,594,484	+		PFLU_RS20350	0.37	-0.4
4,594,484	+		PFLU_RS20350	0.37	-2.1
4,594,484	+		PFLU_RS20350	0.37	-0.9
4,594,484	+		PFLU_RS20350	0.37	-2.2
4,594,485	-		PFLU_RS20350	0.37	+1.7
4,594,485	-		PFLU_RS20350	0.37	-0.3
4,594,485	-		PFLU_RS20350	0.37	+0.8
4,594,485	-		PFLU_RS20350	0.37	-2.6
4,594,485	-		PFLU_RS20350	0.37	-1.5
4,594,485	-		PFLU_RS20350	0.37	-0.7
4,594,485	-		PFLU_RS20350	0.37	-2.2
4,594,485	-		PFLU_RS20350	0.37	-1.2
4,594,485	-		PFLU_RS20350	0.37	+0.5
4,594,485	-		PFLU_RS20350	0.37	-2.8
4,594,485	-		PFLU_RS20350	0.37	-0.0
4,594,485	-		PFLU_RS20350	0.37	-1.8
4,594,566	+		PFLU_RS20350	0.45	+0.3
4,594,566	+		PFLU_RS20350	0.45	-1.9
4,594,567	-		PFLU_RS20350	0.45	-2.0
4,594,728	-		PFLU_RS20350	0.60	-0.2
4,594,761	+		PFLU_RS20350	0.63	-0.5
4,594,788	+		PFLU_RS20350	0.66	+0.3
4,594,788	+		PFLU_RS20350	0.66	+0.4
4,594,788	+		PFLU_RS20350	0.66	+0.5
4,594,789	-		PFLU_RS20350	0.66	-3.2
4,594,789	-		PFLU_RS20350	0.66	+2.7
4,594,789	-		PFLU_RS20350	0.66	+0.7
4,594,789	-		PFLU_RS20350	0.66	+0.4
4,594,789	-		PFLU_RS20350	0.66	+0.5
4,594,817	+		PFLU_RS20350	0.69	+0.1
4,594,856	+		PFLU_RS20350	0.73	-1.2
4,594,856	+		PFLU_RS20350	0.73	-1.0
4,594,856	+		PFLU_RS20350	0.73	+1.5
4,594,856	+		PFLU_RS20350	0.73	-0.9
4,595,136	+				-2.8
4,595,136	+				-1.1
4,595,136	+				-1.3
4,595,136	+				-1.6
4,595,136	+				-2.0
4,595,136	+				-2.6
4,595,136	+				-0.5
4,595,137	-				+1.9
4,595,137	-				+1.9
4,595,137	-				-1.0
4,595,137	-				-0.6
4,595,137	-				-2.2
4,595,137	-				+0.8
4,595,137	-				-2.3
4,595,163	+				+1.3
4,595,163	+				-1.7
4,595,163	+				-0.5
4,595,164	-				+0.9
4,595,164	-				-0.9
4,595,164	-				+0.1
4,595,164	-				-3.4
4,595,164	-				+1.0
4,595,171	+				-1.5
4,595,171	+				-0.9
4,595,199	+				-1.0
4,595,199	+				+0.9
4,595,200	-				-2.7
4,595,311	+		PFLU_RS20355	0.37	-1.1
4,595,312	-		PFLU_RS20355	0.37	-0.4
4,595,542	+				-0.2
4,595,584	+				+0.4
4,595,584	+				-1.0
4,595,584	+				+2.7
4,595,584	+				+0.3
4,595,584	+				-0.1
4,595,585	-				+0.2
4,595,585	-				+0.4
4,595,585	-				-2.6
4,595,585	-				-0.7
4,595,585	-				+0.6
4,595,604	+				-1.5
4,595,604	+				-0.3
4,595,604	+				+1.0
4,595,605	-				-0.5
4,595,721	+		PFLU_RS20360	0.17	+1.8
4,595,722	-		PFLU_RS20360	0.17	+2.5
4,595,939	+		PFLU_RS20360	0.41	+2.6
4,595,939	+		PFLU_RS20360	0.41	-0.5
4,595,940	-		PFLU_RS20360	0.41	+0.1
4,595,940	-		PFLU_RS20360	0.41	+0.1
4,595,954	+		PFLU_RS20360	0.43	+1.2
4,595,954	+		PFLU_RS20360	0.43	+3.2
4,595,954	+		PFLU_RS20360	0.43	+2.4
4,595,954	+		PFLU_RS20360	0.43	+0.3
4,595,954	+		PFLU_RS20360	0.43	+1.9
4,595,954	+		PFLU_RS20360	0.43	+1.6
4,595,955	-		PFLU_RS20360	0.43	-2.5
4,595,955	-		PFLU_RS20360	0.43	-2.8
4,595,955	-		PFLU_RS20360	0.43	+2.1
4,595,955	-		PFLU_RS20360	0.43	+1.9
4,596,038	+		PFLU_RS20360	0.52	-0.6
4,596,217	+		PFLU_RS20360	0.71	-0.8
4,596,217	+		PFLU_RS20360	0.71	+0.1
4,596,281	+		PFLU_RS20360	0.78	+0.6
4,596,282	-		PFLU_RS20360	0.78	+1.1
4,596,457	+				-1.3
4,596,457	+				+1.3
4,596,458	-				+0.3
4,596,458	-				-1.8
4,596,460	+				+1.9
4,596,460	+				+2.5
4,596,460	+				+2.7
4,596,460	+				-1.2
4,596,460	+				+0.4
4,596,461	-				-0.5
4,596,461	-				-1.5
4,596,461	-				-0.8
4,596,461	-				+0.7
4,596,461	-				+3.2
4,596,461	-				+1.3
4,596,461	-				+0.1
4,596,461	-				-0.2
4,596,466	+				-1.2
4,596,466	+				+1.1
4,596,467	-				+1.1
4,596,467	-				-1.9
4,596,467	-				+1.5
4,596,480	+				-2.2
4,596,480	+				-2.2
4,596,480	+				-0.6
4,596,480	+				-1.6
4,596,480	+				+0.2
4,596,480	+				-0.9
4,596,480	+				+1.3
4,596,480	+				+0.9
4,596,480	+				+3.3
4,596,480	+				-1.9
4,596,480	+				+2.3
4,596,480	+				+1.1
4,596,481	-				+3.0
4,596,481	-				-0.3
4,596,481	-				-1.7
4,596,481	-				+0.1
4,596,481	-				+0.1
4,596,481	-				-0.7
4,596,481	-				+2.2
4,596,481	-				+0.9
4,596,481	-				-2.4
4,596,481	-				-2.0
4,596,481	-				+2.2
4,596,481	-				+0.0
4,596,481	-				-0.4
4,596,481	-				-0.3
4,596,488	+				+1.0
4,596,488	+				-2.4
4,596,489	-				+0.7
4,596,512	-				+0.7