Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS19840

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS19835 and PFLU_RS19840 are separated by 77 nucleotidesPFLU_RS19840 and PFLU_RS19845 are separated by 4 nucleotides PFLU_RS19835: PFLU_RS19835 - hypothetical protein, at 4,489,168 to 4,490,082 _RS19835 PFLU_RS19840: PFLU_RS19840 - hypothetical protein, at 4,490,160 to 4,490,585 _RS19840 PFLU_RS19845: PFLU_RS19845 - LLM class flavin-dependent oxidoreductase, at 4,490,590 to 4,491,924 _RS19845 Position (kb) 4490 4491Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4489.162 kb on + strandat 4489.163 kb on - strandat 4489.186 kb on - strandat 4489.306 kb on + strand, within PFLU_RS19835at 4489.306 kb on + strand, within PFLU_RS19835at 4489.306 kb on + strand, within PFLU_RS19835at 4489.306 kb on + strand, within PFLU_RS19835at 4489.306 kb on + strand, within PFLU_RS19835at 4489.306 kb on + strand, within PFLU_RS19835at 4489.306 kb on + strand, within PFLU_RS19835at 4489.306 kb on + strand, within PFLU_RS19835at 4489.307 kb on - strand, within PFLU_RS19835at 4489.307 kb on - strand, within PFLU_RS19835at 4489.308 kb on + strand, within PFLU_RS19835at 4489.365 kb on - strand, within PFLU_RS19835at 4489.365 kb on - strand, within PFLU_RS19835at 4489.402 kb on + strand, within PFLU_RS19835at 4489.402 kb on + strand, within PFLU_RS19835at 4489.402 kb on + strand, within PFLU_RS19835at 4489.403 kb on - strand, within PFLU_RS19835at 4489.403 kb on - strand, within PFLU_RS19835at 4489.560 kb on + strand, within PFLU_RS19835at 4489.620 kb on + strand, within PFLU_RS19835at 4489.621 kb on - strand, within PFLU_RS19835at 4489.675 kb on + strand, within PFLU_RS19835at 4489.679 kb on + strand, within PFLU_RS19835at 4489.679 kb on + strand, within PFLU_RS19835at 4489.679 kb on + strand, within PFLU_RS19835at 4489.680 kb on - strand, within PFLU_RS19835at 4489.680 kb on - strand, within PFLU_RS19835at 4489.680 kb on - strand, within PFLU_RS19835at 4489.680 kb on - strand, within PFLU_RS19835at 4489.683 kb on + strand, within PFLU_RS19835at 4489.697 kb on - strand, within PFLU_RS19835at 4489.752 kb on + strand, within PFLU_RS19835at 4489.752 kb on + strand, within PFLU_RS19835at 4489.752 kb on + strand, within PFLU_RS19835at 4489.752 kb on + strand, within PFLU_RS19835at 4489.752 kb on + strand, within PFLU_RS19835at 4489.753 kb on - strand, within PFLU_RS19835at 4489.753 kb on - strand, within PFLU_RS19835at 4489.753 kb on - strand, within PFLU_RS19835at 4489.753 kb on - strand, within PFLU_RS19835at 4489.753 kb on - strand, within PFLU_RS19835at 4489.779 kb on + strand, within PFLU_RS19835at 4489.779 kb on + strand, within PFLU_RS19835at 4489.780 kb on - strand, within PFLU_RS19835at 4489.780 kb on - strand, within PFLU_RS19835at 4489.780 kb on - strand, within PFLU_RS19835at 4489.814 kb on + strand, within PFLU_RS19835at 4489.869 kb on + strand, within PFLU_RS19835at 4489.869 kb on + strand, within PFLU_RS19835at 4489.870 kb on - strand, within PFLU_RS19835at 4489.870 kb on - strand, within PFLU_RS19835at 4489.884 kb on + strand, within PFLU_RS19835at 4489.885 kb on - strand, within PFLU_RS19835at 4489.926 kb on + strand, within PFLU_RS19835at 4489.942 kb on - strand, within PFLU_RS19835at 4489.950 kb on + strand, within PFLU_RS19835at 4489.956 kb on + strand, within PFLU_RS19835at 4489.956 kb on + strand, within PFLU_RS19835at 4489.956 kb on + strand, within PFLU_RS19835at 4489.956 kb on + strand, within PFLU_RS19835at 4489.982 kb on + strand, within PFLU_RS19835at 4489.992 kb on - strandat 4489.992 kb on - strandat 4490.029 kb on - strandat 4490.062 kb on + strandat 4490.063 kb on - strandat 4490.063 kb on - strandat 4490.109 kb on + strandat 4490.110 kb on - strandat 4490.157 kb on + strandat 4490.157 kb on + strandat 4490.158 kb on - strandat 4490.158 kb on - strandat 4490.158 kb on - strandat 4490.167 kb on + strandat 4490.195 kb on + strandat 4490.196 kb on - strandat 4490.196 kb on - strandat 4490.196 kb on - strandat 4490.196 kb on - strandat 4490.203 kb on + strand, within PFLU_RS19840at 4490.235 kb on + strand, within PFLU_RS19840at 4490.235 kb on + strand, within PFLU_RS19840at 4490.236 kb on - strand, within PFLU_RS19840at 4490.236 kb on - strand, within PFLU_RS19840at 4490.236 kb on - strand, within PFLU_RS19840at 4490.236 kb on - strand, within PFLU_RS19840at 4490.322 kb on + strand, within PFLU_RS19840at 4490.322 kb on + strand, within PFLU_RS19840at 4490.322 kb on + strand, within PFLU_RS19840at 4490.322 kb on + strand, within PFLU_RS19840at 4490.346 kb on + strand, within PFLU_RS19840at 4490.347 kb on - strand, within PFLU_RS19840at 4490.371 kb on + strand, within PFLU_RS19840at 4490.373 kb on + strand, within PFLU_RS19840at 4490.373 kb on + strand, within PFLU_RS19840at 4490.373 kb on + strand, within PFLU_RS19840at 4490.374 kb on - strand, within PFLU_RS19840at 4490.374 kb on - strand, within PFLU_RS19840at 4490.374 kb on - strand, within PFLU_RS19840at 4490.374 kb on - strand, within PFLU_RS19840at 4490.427 kb on + strand, within PFLU_RS19840at 4490.427 kb on + strand, within PFLU_RS19840at 4490.428 kb on - strand, within PFLU_RS19840at 4490.428 kb on - strand, within PFLU_RS19840at 4490.673 kb on - strandat 4490.686 kb on + strandat 4490.687 kb on - strandat 4490.875 kb on + strand, within PFLU_RS19845at 4490.875 kb on + strand, within PFLU_RS19845at 4490.875 kb on + strand, within PFLU_RS19845at 4490.875 kb on + strand, within PFLU_RS19845at 4490.876 kb on - strand, within PFLU_RS19845at 4490.876 kb on - strand, within PFLU_RS19845at 4490.876 kb on - strand, within PFLU_RS19845at 4490.876 kb on - strand, within PFLU_RS19845at 4490.876 kb on - strand, within PFLU_RS19845at 4491.000 kb on - strand, within PFLU_RS19845at 4491.179 kb on + strand, within PFLU_RS19845at 4491.180 kb on - strand, within PFLU_RS19845at 4491.180 kb on - strand, within PFLU_RS19845at 4491.182 kb on + strand, within PFLU_RS19845at 4491.182 kb on + strand, within PFLU_RS19845at 4491.183 kb on - strand, within PFLU_RS19845at 4491.183 kb on - strand, within PFLU_RS19845at 4491.183 kb on - strand, within PFLU_RS19845at 4491.233 kb on + strand, within PFLU_RS19845at 4491.233 kb on + strand, within PFLU_RS19845at 4491.233 kb on + strand, within PFLU_RS19845at 4491.234 kb on - strand, within PFLU_RS19845at 4491.234 kb on - strand, within PFLU_RS19845at 4491.234 kb on - strand, within PFLU_RS19845at 4491.425 kb on + strand, within PFLU_RS19845at 4491.426 kb on - strand, within PFLU_RS19845at 4491.495 kb on + strand, within PFLU_RS19845at 4491.496 kb on - strand, within PFLU_RS19845at 4491.576 kb on + strand, within PFLU_RS19845at 4491.576 kb on + strand, within PFLU_RS19845

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,489,162 + +1.5
4,489,163 - +0.5
4,489,186 - +0.1
4,489,306 + PFLU_RS19835 0.15 -0.0
4,489,306 + PFLU_RS19835 0.15 -0.3
4,489,306 + PFLU_RS19835 0.15 +0.8
4,489,306 + PFLU_RS19835 0.15 -1.0
4,489,306 + PFLU_RS19835 0.15 -0.2
4,489,306 + PFLU_RS19835 0.15 +0.8
4,489,306 + PFLU_RS19835 0.15 -0.8
4,489,306 + PFLU_RS19835 0.15 +0.7
4,489,307 - PFLU_RS19835 0.15 +1.4
4,489,307 - PFLU_RS19835 0.15 +2.8
4,489,308 + PFLU_RS19835 0.15 -1.3
4,489,365 - PFLU_RS19835 0.22 +0.1
4,489,365 - PFLU_RS19835 0.22 +0.7
4,489,402 + PFLU_RS19835 0.26 -0.5
4,489,402 + PFLU_RS19835 0.26 +0.7
4,489,402 + PFLU_RS19835 0.26 +2.3
4,489,403 - PFLU_RS19835 0.26 -0.3
4,489,403 - PFLU_RS19835 0.26 -2.0
4,489,560 + PFLU_RS19835 0.43 -0.1
4,489,620 + PFLU_RS19835 0.49 -1.9
4,489,621 - PFLU_RS19835 0.50 -2.4
4,489,675 + PFLU_RS19835 0.55 +0.2
4,489,679 + PFLU_RS19835 0.56 +1.1
4,489,679 + PFLU_RS19835 0.56 -0.6
4,489,679 + PFLU_RS19835 0.56 +1.5
4,489,680 - PFLU_RS19835 0.56 -2.5
4,489,680 - PFLU_RS19835 0.56 -0.4
4,489,680 - PFLU_RS19835 0.56 +1.6
4,489,680 - PFLU_RS19835 0.56 -1.6
4,489,683 + PFLU_RS19835 0.56 -0.1
4,489,697 - PFLU_RS19835 0.58 -0.2
4,489,752 + PFLU_RS19835 0.64 +2.1
4,489,752 + PFLU_RS19835 0.64 -0.9
4,489,752 + PFLU_RS19835 0.64 +0.6
4,489,752 + PFLU_RS19835 0.64 -0.4
4,489,752 + PFLU_RS19835 0.64 +0.2
4,489,753 - PFLU_RS19835 0.64 +1.1
4,489,753 - PFLU_RS19835 0.64 +0.6
4,489,753 - PFLU_RS19835 0.64 +1.6
4,489,753 - PFLU_RS19835 0.64 +1.4
4,489,753 - PFLU_RS19835 0.64 -0.5
4,489,779 + PFLU_RS19835 0.67 -0.5
4,489,779 + PFLU_RS19835 0.67 -2.5
4,489,780 - PFLU_RS19835 0.67 -1.1
4,489,780 - PFLU_RS19835 0.67 -3.2
4,489,780 - PFLU_RS19835 0.67 -1.1
4,489,814 + PFLU_RS19835 0.71 +0.5
4,489,869 + PFLU_RS19835 0.77 -1.0
4,489,869 + PFLU_RS19835 0.77 -2.2
4,489,870 - PFLU_RS19835 0.77 -1.4
4,489,870 - PFLU_RS19835 0.77 -2.0
4,489,884 + PFLU_RS19835 0.78 -0.8
4,489,885 - PFLU_RS19835 0.78 -0.3
4,489,926 + PFLU_RS19835 0.83 +1.4
4,489,942 - PFLU_RS19835 0.85 +0.8
4,489,950 + PFLU_RS19835 0.85 -0.3
4,489,956 + PFLU_RS19835 0.86 +0.2
4,489,956 + PFLU_RS19835 0.86 +0.7
4,489,956 + PFLU_RS19835 0.86 +0.1
4,489,956 + PFLU_RS19835 0.86 +1.1
4,489,982 + PFLU_RS19835 0.89 +0.7
4,489,992 - -0.1
4,489,992 - +0.5
4,490,029 - -0.2
4,490,062 + -1.3
4,490,063 - -0.2
4,490,063 - -0.2
4,490,109 + -0.5
4,490,110 - +2.5
4,490,157 + +1.5
4,490,157 + +0.1
4,490,158 - +0.1
4,490,158 - -0.5
4,490,158 - -2.1
4,490,167 + +1.6
4,490,195 + -0.5
4,490,196 - +0.1
4,490,196 - -1.9
4,490,196 - -0.8
4,490,196 - -1.0
4,490,203 + PFLU_RS19840 0.10 -1.3
4,490,235 + PFLU_RS19840 0.18 +0.8
4,490,235 + PFLU_RS19840 0.18 -1.1
4,490,236 - PFLU_RS19840 0.18 -2.5
4,490,236 - PFLU_RS19840 0.18 +3.1
4,490,236 - PFLU_RS19840 0.18 +1.2
4,490,236 - PFLU_RS19840 0.18 +0.7
4,490,322 + PFLU_RS19840 0.38 -0.1
4,490,322 + PFLU_RS19840 0.38 +1.0
4,490,322 + PFLU_RS19840 0.38 +0.7
4,490,322 + PFLU_RS19840 0.38 +0.5
4,490,346 + PFLU_RS19840 0.44 +1.8
4,490,347 - PFLU_RS19840 0.44 +1.8
4,490,371 + PFLU_RS19840 0.50 +2.1
4,490,373 + PFLU_RS19840 0.50 -1.8
4,490,373 + PFLU_RS19840 0.50 -0.9
4,490,373 + PFLU_RS19840 0.50 -0.9
4,490,374 - PFLU_RS19840 0.50 +1.3
4,490,374 - PFLU_RS19840 0.50 -2.3
4,490,374 - PFLU_RS19840 0.50 -1.5
4,490,374 - PFLU_RS19840 0.50 -1.1
4,490,427 + PFLU_RS19840 0.63 +2.8
4,490,427 + PFLU_RS19840 0.63 -0.9
4,490,428 - PFLU_RS19840 0.63 -0.3
4,490,428 - PFLU_RS19840 0.63 +1.4
4,490,673 - +1.5
4,490,686 + -0.5
4,490,687 - -1.9
4,490,875 + PFLU_RS19845 0.21 +1.2
4,490,875 + PFLU_RS19845 0.21 +1.4
4,490,875 + PFLU_RS19845 0.21 +0.6
4,490,875 + PFLU_RS19845 0.21 -0.4
4,490,876 - PFLU_RS19845 0.21 -0.5
4,490,876 - PFLU_RS19845 0.21 +0.8
4,490,876 - PFLU_RS19845 0.21 +1.7
4,490,876 - PFLU_RS19845 0.21 +0.5
4,490,876 - PFLU_RS19845 0.21 -0.5
4,491,000 - PFLU_RS19845 0.31 -2.5
4,491,179 + PFLU_RS19845 0.44 -0.1
4,491,180 - PFLU_RS19845 0.44 +0.9
4,491,180 - PFLU_RS19845 0.44 -0.3
4,491,182 + PFLU_RS19845 0.44 +1.9
4,491,182 + PFLU_RS19845 0.44 +0.6
4,491,183 - PFLU_RS19845 0.44 +2.4
4,491,183 - PFLU_RS19845 0.44 +0.5
4,491,183 - PFLU_RS19845 0.44 +0.6
4,491,233 + PFLU_RS19845 0.48 -1.4
4,491,233 + PFLU_RS19845 0.48 +0.1
4,491,233 + PFLU_RS19845 0.48 +0.2
4,491,234 - PFLU_RS19845 0.48 -0.3
4,491,234 - PFLU_RS19845 0.48 -0.0
4,491,234 - PFLU_RS19845 0.48 -1.8
4,491,425 + PFLU_RS19845 0.63 +0.9
4,491,426 - PFLU_RS19845 0.63 +1.5
4,491,495 + PFLU_RS19845 0.68 +2.1
4,491,496 - PFLU_RS19845 0.68 +0.4
4,491,576 + PFLU_RS19845 0.74 +0.4
4,491,576 + PFLU_RS19845 0.74 +1.6

Or see this region's nucleotide sequence