Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS19365

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS19360 and PFLU_RS19365 are separated by 0 nucleotidesPFLU_RS19365 and PFLU_RS19370 are separated by 3 nucleotides PFLU_RS19360: PFLU_RS19360 - alpha-ketoacid dehydrogenase subunit beta, at 4,378,223 to 4,379,281 _RS19360 PFLU_RS19365: PFLU_RS19365 - 2-oxo acid dehydrogenase subunit E2, at 4,379,282 to 4,380,541 _RS19365 PFLU_RS19370: PFLU_RS19370 - dihydrolipoyl dehydrogenase, at 4,380,545 to 4,381,924 _RS19370 Position (kb) 4379 4380 4381Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4378.345 kb on - strand, within PFLU_RS19360at 4378.409 kb on + strand, within PFLU_RS19360at 4378.409 kb on + strand, within PFLU_RS19360at 4378.409 kb on + strand, within PFLU_RS19360at 4378.409 kb on + strand, within PFLU_RS19360at 4378.409 kb on + strand, within PFLU_RS19360at 4378.410 kb on - strand, within PFLU_RS19360at 4378.410 kb on - strand, within PFLU_RS19360at 4378.523 kb on + strand, within PFLU_RS19360at 4378.523 kb on + strand, within PFLU_RS19360at 4378.523 kb on + strand, within PFLU_RS19360at 4378.523 kb on + strand, within PFLU_RS19360at 4378.524 kb on - strand, within PFLU_RS19360at 4378.524 kb on - strand, within PFLU_RS19360at 4378.524 kb on - strand, within PFLU_RS19360at 4378.524 kb on - strand, within PFLU_RS19360at 4378.529 kb on + strand, within PFLU_RS19360at 4378.530 kb on - strand, within PFLU_RS19360at 4378.637 kb on + strand, within PFLU_RS19360at 4378.637 kb on + strand, within PFLU_RS19360at 4378.664 kb on - strand, within PFLU_RS19360at 4378.796 kb on + strand, within PFLU_RS19360at 4378.796 kb on + strand, within PFLU_RS19360at 4378.796 kb on + strand, within PFLU_RS19360at 4378.797 kb on - strand, within PFLU_RS19360at 4378.877 kb on + strand, within PFLU_RS19360at 4378.878 kb on - strand, within PFLU_RS19360at 4378.880 kb on + strand, within PFLU_RS19360at 4378.880 kb on + strand, within PFLU_RS19360at 4378.880 kb on + strand, within PFLU_RS19360at 4378.880 kb on + strand, within PFLU_RS19360at 4378.880 kb on + strand, within PFLU_RS19360at 4378.880 kb on + strand, within PFLU_RS19360at 4378.880 kb on + strand, within PFLU_RS19360at 4378.880 kb on + strand, within PFLU_RS19360at 4378.880 kb on + strand, within PFLU_RS19360at 4378.880 kb on + strand, within PFLU_RS19360at 4378.881 kb on - strand, within PFLU_RS19360at 4378.881 kb on - strand, within PFLU_RS19360at 4378.881 kb on - strand, within PFLU_RS19360at 4378.881 kb on - strand, within PFLU_RS19360at 4378.881 kb on - strand, within PFLU_RS19360at 4378.881 kb on - strand, within PFLU_RS19360at 4378.881 kb on - strand, within PFLU_RS19360at 4378.881 kb on - strand, within PFLU_RS19360at 4378.881 kb on - strand, within PFLU_RS19360at 4378.881 kb on - strand, within PFLU_RS19360at 4378.943 kb on + strand, within PFLU_RS19360at 4378.943 kb on + strand, within PFLU_RS19360at 4378.944 kb on - strand, within PFLU_RS19360at 4378.944 kb on - strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.958 kb on + strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4378.959 kb on - strand, within PFLU_RS19360at 4379.225 kb on + strandat 4379.225 kb on + strandat 4379.226 kb on - strandat 4379.226 kb on - strandat 4379.226 kb on - strandat 4379.226 kb on - strandat 4379.296 kb on + strandat 4379.497 kb on + strand, within PFLU_RS19365at 4379.497 kb on + strand, within PFLU_RS19365at 4379.497 kb on + strand, within PFLU_RS19365at 4379.498 kb on - strand, within PFLU_RS19365at 4379.498 kb on - strand, within PFLU_RS19365at 4379.786 kb on + strand, within PFLU_RS19365at 4379.786 kb on + strand, within PFLU_RS19365at 4379.786 kb on + strand, within PFLU_RS19365at 4379.786 kb on + strand, within PFLU_RS19365at 4379.786 kb on + strand, within PFLU_RS19365at 4379.786 kb on + strand, within PFLU_RS19365at 4379.786 kb on + strand, within PFLU_RS19365at 4379.787 kb on - strand, within PFLU_RS19365at 4379.787 kb on - strand, within PFLU_RS19365at 4379.787 kb on - strand, within PFLU_RS19365at 4379.787 kb on - strand, within PFLU_RS19365at 4379.787 kb on - strand, within PFLU_RS19365at 4379.787 kb on - strand, within PFLU_RS19365at 4379.933 kb on + strand, within PFLU_RS19365at 4379.933 kb on + strand, within PFLU_RS19365at 4379.933 kb on + strand, within PFLU_RS19365at 4379.933 kb on + strand, within PFLU_RS19365at 4379.933 kb on + strand, within PFLU_RS19365at 4379.933 kb on + strand, within PFLU_RS19365at 4379.934 kb on - strand, within PFLU_RS19365at 4379.934 kb on - strand, within PFLU_RS19365at 4379.934 kb on - strand, within PFLU_RS19365at 4379.934 kb on - strand, within PFLU_RS19365at 4380.087 kb on - strand, within PFLU_RS19365at 4380.132 kb on + strand, within PFLU_RS19365at 4380.132 kb on + strand, within PFLU_RS19365at 4380.132 kb on + strand, within PFLU_RS19365at 4380.132 kb on + strand, within PFLU_RS19365at 4380.132 kb on + strand, within PFLU_RS19365at 4380.132 kb on + strand, within PFLU_RS19365at 4380.132 kb on + strand, within PFLU_RS19365at 4380.132 kb on + strand, within PFLU_RS19365at 4380.132 kb on + strand, within PFLU_RS19365at 4380.133 kb on - strand, within PFLU_RS19365at 4380.133 kb on - strand, within PFLU_RS19365at 4380.133 kb on - strand, within PFLU_RS19365at 4380.133 kb on - strand, within PFLU_RS19365at 4380.133 kb on - strand, within PFLU_RS19365at 4380.133 kb on - strand, within PFLU_RS19365at 4380.133 kb on - strand, within PFLU_RS19365at 4380.133 kb on - strand, within PFLU_RS19365at 4380.169 kb on - strand, within PFLU_RS19365at 4380.539 kb on + strandat 4380.563 kb on - strandat 4380.599 kb on + strandat 4380.599 kb on + strandat 4381.088 kb on + strand, within PFLU_RS19370at 4381.089 kb on - strand, within PFLU_RS19370at 4381.089 kb on - strand, within PFLU_RS19370at 4381.089 kb on - strand, within PFLU_RS19370at 4381.120 kb on + strand, within PFLU_RS19370at 4381.120 kb on + strand, within PFLU_RS19370at 4381.120 kb on + strand, within PFLU_RS19370at 4381.120 kb on + strand, within PFLU_RS19370at 4381.121 kb on - strand, within PFLU_RS19370at 4381.121 kb on - strand, within PFLU_RS19370at 4381.176 kb on - strand, within PFLU_RS19370at 4381.281 kb on + strand, within PFLU_RS19370at 4381.281 kb on + strand, within PFLU_RS19370at 4381.282 kb on - strand, within PFLU_RS19370at 4381.282 kb on - strand, within PFLU_RS19370at 4381.282 kb on - strand, within PFLU_RS19370at 4381.282 kb on - strand, within PFLU_RS19370at 4381.282 kb on - strand, within PFLU_RS19370at 4381.282 kb on - strand, within PFLU_RS19370at 4381.282 kb on - strand, within PFLU_RS19370at 4381.534 kb on + strand, within PFLU_RS19370at 4381.535 kb on - strand, within PFLU_RS19370

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,378,345 - PFLU_RS19360 0.12 +1.3
4,378,409 + PFLU_RS19360 0.18 +0.4
4,378,409 + PFLU_RS19360 0.18 -0.2
4,378,409 + PFLU_RS19360 0.18 +1.1
4,378,409 + PFLU_RS19360 0.18 -1.8
4,378,409 + PFLU_RS19360 0.18 -2.2
4,378,410 - PFLU_RS19360 0.18 -1.8
4,378,410 - PFLU_RS19360 0.18 +1.6
4,378,523 + PFLU_RS19360 0.28 -0.6
4,378,523 + PFLU_RS19360 0.28 +1.2
4,378,523 + PFLU_RS19360 0.28 +1.5
4,378,523 + PFLU_RS19360 0.28 -0.8
4,378,524 - PFLU_RS19360 0.28 +0.7
4,378,524 - PFLU_RS19360 0.28 -0.4
4,378,524 - PFLU_RS19360 0.28 -0.1
4,378,524 - PFLU_RS19360 0.28 -2.0
4,378,529 + PFLU_RS19360 0.29 -1.3
4,378,530 - PFLU_RS19360 0.29 -2.3
4,378,637 + PFLU_RS19360 0.39 +0.7
4,378,637 + PFLU_RS19360 0.39 -0.9
4,378,664 - PFLU_RS19360 0.42 -0.8
4,378,796 + PFLU_RS19360 0.54 -1.4
4,378,796 + PFLU_RS19360 0.54 -1.3
4,378,796 + PFLU_RS19360 0.54 -1.5
4,378,797 - PFLU_RS19360 0.54 -0.8
4,378,877 + PFLU_RS19360 0.62 -0.3
4,378,878 - PFLU_RS19360 0.62 -2.4
4,378,880 + PFLU_RS19360 0.62 -0.6
4,378,880 + PFLU_RS19360 0.62 +0.2
4,378,880 + PFLU_RS19360 0.62 -1.0
4,378,880 + PFLU_RS19360 0.62 -1.4
4,378,880 + PFLU_RS19360 0.62 +1.1
4,378,880 + PFLU_RS19360 0.62 -3.1
4,378,880 + PFLU_RS19360 0.62 +2.9
4,378,880 + PFLU_RS19360 0.62 +0.9
4,378,880 + PFLU_RS19360 0.62 -2.6
4,378,880 + PFLU_RS19360 0.62 +0.6
4,378,881 - PFLU_RS19360 0.62 +1.7
4,378,881 - PFLU_RS19360 0.62 -2.2
4,378,881 - PFLU_RS19360 0.62 -2.0
4,378,881 - PFLU_RS19360 0.62 -0.7
4,378,881 - PFLU_RS19360 0.62 +0.4
4,378,881 - PFLU_RS19360 0.62 -0.5
4,378,881 - PFLU_RS19360 0.62 +1.1
4,378,881 - PFLU_RS19360 0.62 +0.4
4,378,881 - PFLU_RS19360 0.62 +3.2
4,378,881 - PFLU_RS19360 0.62 -0.6
4,378,943 + PFLU_RS19360 0.68 -2.0
4,378,943 + PFLU_RS19360 0.68 -1.4
4,378,944 - PFLU_RS19360 0.68 +0.7
4,378,944 - PFLU_RS19360 0.68 -0.3
4,378,958 + PFLU_RS19360 0.69 -0.8
4,378,958 + PFLU_RS19360 0.69 -2.2
4,378,958 + PFLU_RS19360 0.69 +1.2
4,378,958 + PFLU_RS19360 0.69 -1.2
4,378,958 + PFLU_RS19360 0.69 +2.0
4,378,958 + PFLU_RS19360 0.69 +0.3
4,378,958 + PFLU_RS19360 0.69 +0.4
4,378,958 + PFLU_RS19360 0.69 +2.3
4,378,958 + PFLU_RS19360 0.69 -0.8
4,378,958 + PFLU_RS19360 0.69 -1.2
4,378,958 + PFLU_RS19360 0.69 -2.7
4,378,958 + PFLU_RS19360 0.69 +0.0
4,378,958 + PFLU_RS19360 0.69 -2.4
4,378,958 + PFLU_RS19360 0.69 +0.6
4,378,958 + PFLU_RS19360 0.69 -0.6
4,378,958 + PFLU_RS19360 0.69 +1.1
4,378,958 + PFLU_RS19360 0.69 -2.3
4,378,958 + PFLU_RS19360 0.69 +1.2
4,378,958 + PFLU_RS19360 0.69 +0.1
4,378,958 + PFLU_RS19360 0.69 +0.2
4,378,958 + PFLU_RS19360 0.69 +0.2
4,378,958 + PFLU_RS19360 0.69 -2.3
4,378,958 + PFLU_RS19360 0.69 +0.1
4,378,959 - PFLU_RS19360 0.69 +2.1
4,378,959 - PFLU_RS19360 0.69 +1.1
4,378,959 - PFLU_RS19360 0.69 +0.3
4,378,959 - PFLU_RS19360 0.69 +0.8
4,378,959 - PFLU_RS19360 0.69 -0.2
4,378,959 - PFLU_RS19360 0.69 -0.6
4,378,959 - PFLU_RS19360 0.69 -0.3
4,378,959 - PFLU_RS19360 0.69 -0.7
4,378,959 - PFLU_RS19360 0.69 -0.5
4,378,959 - PFLU_RS19360 0.69 -2.0
4,378,959 - PFLU_RS19360 0.69 -0.4
4,378,959 - PFLU_RS19360 0.69 +0.4
4,378,959 - PFLU_RS19360 0.69 +0.0
4,378,959 - PFLU_RS19360 0.69 -1.1
4,378,959 - PFLU_RS19360 0.69 +0.8
4,378,959 - PFLU_RS19360 0.69 -0.2
4,378,959 - PFLU_RS19360 0.69 -1.8
4,378,959 - PFLU_RS19360 0.69 +2.1
4,378,959 - PFLU_RS19360 0.69 -0.9
4,379,225 + +0.6
4,379,225 + +1.2
4,379,226 - -2.0
4,379,226 - +0.3
4,379,226 - -0.4
4,379,226 - -2.7
4,379,296 + -0.7
4,379,497 + PFLU_RS19365 0.17 +0.0
4,379,497 + PFLU_RS19365 0.17 +0.6
4,379,497 + PFLU_RS19365 0.17 +0.4
4,379,498 - PFLU_RS19365 0.17 -1.4
4,379,498 - PFLU_RS19365 0.17 +0.9
4,379,786 + PFLU_RS19365 0.40 +0.4
4,379,786 + PFLU_RS19365 0.40 -0.3
4,379,786 + PFLU_RS19365 0.40 -0.1
4,379,786 + PFLU_RS19365 0.40 +1.7
4,379,786 + PFLU_RS19365 0.40 +2.1
4,379,786 + PFLU_RS19365 0.40 -1.1
4,379,786 + PFLU_RS19365 0.40 +0.9
4,379,787 - PFLU_RS19365 0.40 -0.1
4,379,787 - PFLU_RS19365 0.40 +0.4
4,379,787 - PFLU_RS19365 0.40 +0.7
4,379,787 - PFLU_RS19365 0.40 +2.6
4,379,787 - PFLU_RS19365 0.40 +0.8
4,379,787 - PFLU_RS19365 0.40 -1.9
4,379,933 + PFLU_RS19365 0.52 -0.6
4,379,933 + PFLU_RS19365 0.52 +0.7
4,379,933 + PFLU_RS19365 0.52 +0.6
4,379,933 + PFLU_RS19365 0.52 +1.4
4,379,933 + PFLU_RS19365 0.52 -2.5
4,379,933 + PFLU_RS19365 0.52 +1.3
4,379,934 - PFLU_RS19365 0.52 -0.7
4,379,934 - PFLU_RS19365 0.52 -0.2
4,379,934 - PFLU_RS19365 0.52 +0.0
4,379,934 - PFLU_RS19365 0.52 +1.0
4,380,087 - PFLU_RS19365 0.64 -0.2
4,380,132 + PFLU_RS19365 0.67 +1.0
4,380,132 + PFLU_RS19365 0.67 -0.3
4,380,132 + PFLU_RS19365 0.67 -0.1
4,380,132 + PFLU_RS19365 0.67 -1.0
4,380,132 + PFLU_RS19365 0.67 +0.1
4,380,132 + PFLU_RS19365 0.67 -3.2
4,380,132 + PFLU_RS19365 0.67 -1.1
4,380,132 + PFLU_RS19365 0.67 +0.2
4,380,132 + PFLU_RS19365 0.67 -1.6
4,380,133 - PFLU_RS19365 0.68 -0.8
4,380,133 - PFLU_RS19365 0.68 -0.6
4,380,133 - PFLU_RS19365 0.68 +0.8
4,380,133 - PFLU_RS19365 0.68 -0.8
4,380,133 - PFLU_RS19365 0.68 -0.3
4,380,133 - PFLU_RS19365 0.68 +0.9
4,380,133 - PFLU_RS19365 0.68 -0.3
4,380,133 - PFLU_RS19365 0.68 -0.1
4,380,169 - PFLU_RS19365 0.70 -3.5
4,380,539 + -2.4
4,380,563 - +0.4
4,380,599 + -0.6
4,380,599 + +1.1
4,381,088 + PFLU_RS19370 0.39 +0.2
4,381,089 - PFLU_RS19370 0.39 -2.7
4,381,089 - PFLU_RS19370 0.39 -1.5
4,381,089 - PFLU_RS19370 0.39 -2.1
4,381,120 + PFLU_RS19370 0.42 +1.7
4,381,120 + PFLU_RS19370 0.42 -1.0
4,381,120 + PFLU_RS19370 0.42 +1.4
4,381,120 + PFLU_RS19370 0.42 -0.4
4,381,121 - PFLU_RS19370 0.42 -2.6
4,381,121 - PFLU_RS19370 0.42 -0.4
4,381,176 - PFLU_RS19370 0.46 -0.6
4,381,281 + PFLU_RS19370 0.53 -0.1
4,381,281 + PFLU_RS19370 0.53 +0.0
4,381,282 - PFLU_RS19370 0.53 +1.4
4,381,282 - PFLU_RS19370 0.53 +0.7
4,381,282 - PFLU_RS19370 0.53 +0.9
4,381,282 - PFLU_RS19370 0.53 -0.4
4,381,282 - PFLU_RS19370 0.53 -0.4
4,381,282 - PFLU_RS19370 0.53 +0.6
4,381,282 - PFLU_RS19370 0.53 -1.7
4,381,534 + PFLU_RS19370 0.72 -0.2
4,381,535 - PFLU_RS19370 0.72 -0.1

Or see this region's nucleotide sequence