Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS30905 and PFLU_RS18345 are separated by 261 nucleotides PFLU_RS18345 and PFLU_RS18350 are separated by 40 nucleotides PFLU_RS18350 and PFLU_RS18355 are separated by 293 nucleotides PFLU_RS18355 and PFLU_RS18360 are separated by 152 nucleotides
PFLU_RS30905: PFLU_RS30905 - hypothetical protein, at 4,161,812 to 4,162,261
_RS30905
PFLU_RS18345: PFLU_RS18345 - hypothetical protein, at 4,162,523 to 4,163,146
_RS18345
PFLU_RS18350: PFLU_RS18350 - GIY-YIG nuclease family protein, at 4,163,187 to 4,163,321
_RS18350
PFLU_RS18355: PFLU_RS18355 - tRNA-Ser, at 4,163,615 to 4,163,705
_RS18355
PFLU_RS18360: PFLU_RS18360 - Bax inhibitor-1/YccA family protein, at 4,163,858 to 4,164,529
_RS18360
Position (kb) 4162
4163
4164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4161.540 kb on + strand at 4161.637 kb on + strand at 4161.637 kb on + strand at 4161.690 kb on - strand at 4161.691 kb on + strand at 4161.691 kb on + strand at 4161.691 kb on + strand at 4161.691 kb on + strand at 4161.692 kb on - strand at 4161.727 kb on + strand at 4161.728 kb on - strand at 4161.734 kb on + strand at 4161.770 kb on + strand at 4161.770 kb on + strand at 4161.809 kb on - strand at 4161.810 kb on + strand at 4161.873 kb on + strand, within PFLU_RS30905 at 4161.883 kb on + strand, within PFLU_RS30905 at 4161.884 kb on - strand, within PFLU_RS30905 at 4161.937 kb on + strand, within PFLU_RS30905 at 4161.956 kb on + strand, within PFLU_RS30905 at 4161.984 kb on + strand, within PFLU_RS30905 at 4161.985 kb on - strand, within PFLU_RS30905 at 4162.078 kb on + strand, within PFLU_RS30905 at 4162.088 kb on - strand, within PFLU_RS30905 at 4162.136 kb on - strand, within PFLU_RS30905 at 4162.186 kb on + strand, within PFLU_RS30905 at 4162.231 kb on + strand at 4162.235 kb on + strand at 4162.235 kb on + strand at 4162.235 kb on + strand at 4162.274 kb on - strand at 4162.294 kb on + strand at 4162.487 kb on + strand at 4162.488 kb on - strand at 4162.494 kb on + strand at 4162.495 kb on - strand at 4162.499 kb on - strand at 4162.574 kb on + strand at 4162.610 kb on - strand, within PFLU_RS18345 at 4162.610 kb on - strand, within PFLU_RS18345 at 4162.660 kb on - strand, within PFLU_RS18345 at 4162.753 kb on - strand, within PFLU_RS18345 at 4162.759 kb on + strand, within PFLU_RS18345 at 4162.785 kb on - strand, within PFLU_RS18345 at 4162.822 kb on + strand, within PFLU_RS18345 at 4162.822 kb on + strand, within PFLU_RS18345 at 4162.856 kb on + strand, within PFLU_RS18345 at 4162.864 kb on + strand, within PFLU_RS18345 at 4162.865 kb on - strand, within PFLU_RS18345 at 4162.950 kb on - strand, within PFLU_RS18345 at 4162.973 kb on - strand, within PFLU_RS18345 at 4162.973 kb on - strand, within PFLU_RS18345 at 4162.974 kb on + strand, within PFLU_RS18345 at 4162.974 kb on + strand, within PFLU_RS18345 at 4162.974 kb on + strand, within PFLU_RS18345 at 4162.975 kb on - strand, within PFLU_RS18345 at 4162.999 kb on - strand, within PFLU_RS18345 at 4163.053 kb on + strand, within PFLU_RS18345 at 4163.054 kb on - strand, within PFLU_RS18345 at 4163.116 kb on - strand at 4163.211 kb on - strand, within PFLU_RS18350 at 4163.307 kb on + strand, within PFLU_RS18350 at 4163.308 kb on - strand at 4163.308 kb on - strand at 4163.499 kb on + strand at 4163.499 kb on + strand at 4163.499 kb on + strand at 4163.500 kb on - strand at 4163.526 kb on + strand at 4163.526 kb on + strand at 4163.526 kb on + strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.527 kb on - strand at 4163.543 kb on + strand at 4163.543 kb on + strand at 4163.543 kb on + strand at 4163.543 kb on + strand at 4163.543 kb on + strand at 4163.544 kb on - strand at 4163.544 kb on - strand at 4163.544 kb on - strand at 4163.544 kb on - strand at 4163.608 kb on - strand at 4163.723 kb on - strand at 4163.725 kb on - strand at 4163.725 kb on - strand at 4163.725 kb on - strand at 4163.725 kb on - strand at 4163.728 kb on - strand at 4163.799 kb on + strand at 4163.813 kb on + strand at 4163.873 kb on + strand at 4163.873 kb on + strand at 4163.873 kb on + strand at 4163.874 kb on - strand at 4163.874 kb on - strand at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.936 kb on + strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4163.937 kb on - strand, within PFLU_RS18360 at 4164.016 kb on + strand, within PFLU_RS18360 at 4164.016 kb on + strand, within PFLU_RS18360 at 4164.017 kb on - strand, within PFLU_RS18360 at 4164.017 kb on - strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.041 kb on + strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.042 kb on - strand, within PFLU_RS18360 at 4164.128 kb on - strand, within PFLU_RS18360
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,161,540 + +0.1 4,161,637 + +0.7 4,161,637 + +0.6 4,161,690 - -0.1 4,161,691 + -2.3 4,161,691 + -2.4 4,161,691 + +0.7 4,161,691 + -1.0 4,161,692 - +0.2 4,161,727 + -1.8 4,161,728 - +0.2 4,161,734 + +0.1 4,161,770 + +1.1 4,161,770 + -1.6 4,161,809 - +1.5 4,161,810 + -2.3 4,161,873 + PFLU_RS30905 0.14 -2.5 4,161,883 + PFLU_RS30905 0.16 +0.3 4,161,884 - PFLU_RS30905 0.16 -1.6 4,161,937 + PFLU_RS30905 0.28 +0.0 4,161,956 + PFLU_RS30905 0.32 +0.2 4,161,984 + PFLU_RS30905 0.38 +0.2 4,161,985 - PFLU_RS30905 0.38 -2.0 4,162,078 + PFLU_RS30905 0.59 -1.3 4,162,088 - PFLU_RS30905 0.61 +0.2 4,162,136 - PFLU_RS30905 0.72 +1.8 4,162,186 + PFLU_RS30905 0.83 +0.9 4,162,231 + -0.4 4,162,235 + +1.3 4,162,235 + -1.9 4,162,235 + -2.1 4,162,274 - -0.0 4,162,294 + -0.9 4,162,487 + +1.8 4,162,488 - +0.0 4,162,494 + +1.8 4,162,495 - +2.7 4,162,499 - +0.7 4,162,574 + -0.0 4,162,610 - PFLU_RS18345 0.14 +0.3 4,162,610 - PFLU_RS18345 0.14 -0.9 4,162,660 - PFLU_RS18345 0.22 +1.6 4,162,753 - PFLU_RS18345 0.37 +2.6 4,162,759 + PFLU_RS18345 0.38 -0.0 4,162,785 - PFLU_RS18345 0.42 -1.7 4,162,822 + PFLU_RS18345 0.48 -2.3 4,162,822 + PFLU_RS18345 0.48 +0.2 4,162,856 + PFLU_RS18345 0.53 +0.1 4,162,864 + PFLU_RS18345 0.55 +0.9 4,162,865 - PFLU_RS18345 0.55 -3.0 4,162,950 - PFLU_RS18345 0.68 -2.2 4,162,973 - PFLU_RS18345 0.72 +0.2 4,162,973 - PFLU_RS18345 0.72 +1.0 4,162,974 + PFLU_RS18345 0.72 -1.3 4,162,974 + PFLU_RS18345 0.72 -0.1 4,162,974 + PFLU_RS18345 0.72 -1.1 4,162,975 - PFLU_RS18345 0.72 +1.5 4,162,999 - PFLU_RS18345 0.76 +1.1 4,163,053 + PFLU_RS18345 0.85 +0.3 4,163,054 - PFLU_RS18345 0.85 +0.9 4,163,116 - +1.9 4,163,211 - PFLU_RS18350 0.18 -1.7 4,163,307 + PFLU_RS18350 0.89 -0.1 4,163,308 - +1.9 4,163,308 - -0.5 4,163,499 + +1.4 4,163,499 + +0.9 4,163,499 + -0.2 4,163,500 - -0.4 4,163,526 + -1.0 4,163,526 + +0.8 4,163,526 + -1.3 4,163,527 - +2.1 4,163,527 - +0.6 4,163,527 - +2.9 4,163,527 - +1.4 4,163,527 - -0.4 4,163,527 - -2.1 4,163,543 + -0.7 4,163,543 + +1.3 4,163,543 + -0.1 4,163,543 + +0.9 4,163,543 + +1.0 4,163,544 - -0.4 4,163,544 - +1.4 4,163,544 - -1.3 4,163,544 - +0.9 4,163,608 - +0.6 4,163,723 - +1.1 4,163,725 - +1.2 4,163,725 - +0.3 4,163,725 - -1.1 4,163,725 - +2.9 4,163,728 - +0.3 4,163,799 + +1.3 4,163,813 + -0.1 4,163,873 + +2.9 4,163,873 + +2.5 4,163,873 + +1.9 4,163,874 - -3.4 4,163,874 - -1.3 4,163,936 + PFLU_RS18360 0.12 +1.0 4,163,936 + PFLU_RS18360 0.12 -0.1 4,163,936 + PFLU_RS18360 0.12 +0.8 4,163,936 + PFLU_RS18360 0.12 -0.0 4,163,936 + PFLU_RS18360 0.12 -2.6 4,163,936 + PFLU_RS18360 0.12 -1.1 4,163,936 + PFLU_RS18360 0.12 +0.4 4,163,936 + PFLU_RS18360 0.12 -0.1 4,163,936 + PFLU_RS18360 0.12 -1.0 4,163,936 + PFLU_RS18360 0.12 -1.2 4,163,936 + PFLU_RS18360 0.12 +0.7 4,163,936 + PFLU_RS18360 0.12 -2.1 4,163,937 - PFLU_RS18360 0.12 -0.1 4,163,937 - PFLU_RS18360 0.12 -2.9 4,163,937 - PFLU_RS18360 0.12 -0.4 4,163,937 - PFLU_RS18360 0.12 -1.3 4,164,016 + PFLU_RS18360 0.24 +0.8 4,164,016 + PFLU_RS18360 0.24 -1.9 4,164,017 - PFLU_RS18360 0.24 +1.0 4,164,017 - PFLU_RS18360 0.24 +0.5 4,164,041 + PFLU_RS18360 0.27 +1.9 4,164,041 + PFLU_RS18360 0.27 +0.7 4,164,041 + PFLU_RS18360 0.27 +0.6 4,164,041 + PFLU_RS18360 0.27 -0.4 4,164,041 + PFLU_RS18360 0.27 -0.2 4,164,041 + PFLU_RS18360 0.27 -2.0 4,164,041 + PFLU_RS18360 0.27 -2.0 4,164,041 + PFLU_RS18360 0.27 +3.6 4,164,041 + PFLU_RS18360 0.27 -0.2 4,164,041 + PFLU_RS18360 0.27 -0.4 4,164,041 + PFLU_RS18360 0.27 +0.1 4,164,041 + PFLU_RS18360 0.27 +1.5 4,164,042 - PFLU_RS18360 0.27 -0.0 4,164,042 - PFLU_RS18360 0.27 -2.5 4,164,042 - PFLU_RS18360 0.27 -0.4 4,164,042 - PFLU_RS18360 0.27 -1.3 4,164,042 - PFLU_RS18360 0.27 +0.4 4,164,042 - PFLU_RS18360 0.27 -1.7 4,164,042 - PFLU_RS18360 0.27 -2.1 4,164,042 - PFLU_RS18360 0.27 -1.5 4,164,042 - PFLU_RS18360 0.27 -3.0 4,164,042 - PFLU_RS18360 0.27 +2.6 4,164,042 - PFLU_RS18360 0.27 -2.4 4,164,042 - PFLU_RS18360 0.27 +2.9 4,164,042 - PFLU_RS18360 0.27 -0.7 4,164,042 - PFLU_RS18360 0.27 +1.0 4,164,128 - PFLU_RS18360 0.40 +0.9
Or see this region's nucleotide sequence