Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12695

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,867,736	+				-0.7
2,867,736	+				-1.7
2,867,736	+				-0.2
2,867,737	-				+1.0
2,867,737	-				-0.1
2,867,737	-				-1.5
2,867,916	+				+0.7
2,867,916	+				-0.4
2,867,916	+				-2.3
2,867,916	+				+0.8
2,867,916	+				-2.2
2,867,916	+				-0.8
2,867,917	-				+2.0
2,867,917	-				-2.2
2,867,917	-				+0.1
2,867,917	-				+1.0
2,868,100	-				-0.7
2,868,124	-				+0.6
2,868,284	+				+1.4
2,868,285	-				-0.9
2,868,316	+				-1.2
2,868,417	+				+0.1
2,868,420	+				-2.2
2,868,420	+				+1.9
2,868,420	+				-0.7
2,868,420	+				-1.1
2,868,420	+				+0.6
2,868,420	+				-2.7
2,868,420	+				-1.1
2,868,420	+				-2.8
2,868,420	+				+0.3
2,868,420	+				+1.9
2,868,421	-				+0.6
2,868,421	-				+1.3
2,868,432	+				+1.2
2,868,433	-				-2.4
2,868,554	+				-0.4
2,868,554	+				+0.1
2,868,555	-				+0.3
2,868,873	+		PFLU_RS12695	0.17	+1.8
2,868,873	+		PFLU_RS12695	0.17	-1.5
2,868,873	+		PFLU_RS12695	0.17	-2.2
2,869,005	+		PFLU_RS12695	0.22	+0.9
2,869,092	+		PFLU_RS12695	0.26	-0.9
2,869,197	+		PFLU_RS12695	0.30	+2.6
2,869,198	-		PFLU_RS12695	0.30	+5.8
2,869,198	-		PFLU_RS12695	0.30	+1.6
2,869,347	+		PFLU_RS12695	0.36	+1.9
2,869,347	+		PFLU_RS12695	0.36	+2.3
2,869,348	-		PFLU_RS12695	0.36	+1.1
2,869,348	-		PFLU_RS12695	0.36	-0.6
2,869,393	+		PFLU_RS12695	0.38	-0.1
2,869,394	-		PFLU_RS12695	0.38	-0.7
2,869,509	+		PFLU_RS12695	0.42	+1.0
2,869,544	+		PFLU_RS12695	0.44	+3.5
2,869,545	-		PFLU_RS12695	0.44	+1.2
2,869,617	+		PFLU_RS12695	0.47	+0.2
2,869,618	-		PFLU_RS12695	0.47	+1.3
2,869,620	+		PFLU_RS12695	0.47	+1.3
2,869,620	+		PFLU_RS12695	0.47	+0.1
2,869,620	+		PFLU_RS12695	0.47	+2.2
2,869,620	+		PFLU_RS12695	0.47	-0.9
2,869,621	-		PFLU_RS12695	0.47	+0.8
2,869,720	-		PFLU_RS12695	0.51	+0.5
2,869,728	+		PFLU_RS12695	0.51	-0.9
2,869,728	+		PFLU_RS12695	0.51	+1.5
2,869,729	-		PFLU_RS12695	0.51	+1.1
2,869,729	-		PFLU_RS12695	0.51	+2.3
2,869,729	-		PFLU_RS12695	0.51	+0.1
2,869,729	-		PFLU_RS12695	0.51	+0.3
2,869,729	-		PFLU_RS12695	0.51	-0.2
2,869,729	-		PFLU_RS12695	0.51	+0.5
2,869,794	+		PFLU_RS12695	0.54	-0.4
2,869,794	+		PFLU_RS12695	0.54	-0.4
2,869,795	-		PFLU_RS12695	0.54	-0.5
2,869,795	-		PFLU_RS12695	0.54	+0.9
2,869,795	-		PFLU_RS12695	0.54	+0.2
2,869,911	+		PFLU_RS12695	0.59	+1.5
2,869,911	+		PFLU_RS12695	0.59	+1.8
2,869,935	-		PFLU_RS12695	0.59	-1.7
2,869,951	-		PFLU_RS12695	0.60	-0.2
2,869,951	-		PFLU_RS12695	0.60	+0.0
2,869,951	-		PFLU_RS12695	0.60	-2.7
2,869,977	+		PFLU_RS12695	0.61	+0.5
2,869,978	-		PFLU_RS12695	0.61	-2.1
2,869,978	-		PFLU_RS12695	0.61	+0.3
2,869,978	-		PFLU_RS12695	0.61	-1.2
2,869,978	-		PFLU_RS12695	0.61	+3.0
2,870,019	+		PFLU_RS12695	0.63	+0.7
2,870,179	-		PFLU_RS12695	0.69	+0.4
2,870,215	-		PFLU_RS12695	0.71	-0.7
2,870,307	+		PFLU_RS12695	0.74	-2.5
2,870,307	+		PFLU_RS12695	0.74	+0.9
2,870,334	-		PFLU_RS12695	0.75	-0.2
2,870,345	+		PFLU_RS12695	0.76	-2.4
2,870,346	-		PFLU_RS12695	0.76	-2.1
2,870,346	-		PFLU_RS12695	0.76	+1.1
2,870,508	+		PFLU_RS12695	0.82	-1.6
2,870,514	+		PFLU_RS12695	0.83	-0.7
2,870,655	+		PFLU_RS12695	0.88	-0.4
2,870,655	+		PFLU_RS12695	0.88	+1.6
2,870,655	+		PFLU_RS12695	0.88	+0.1
2,870,655	+		PFLU_RS12695	0.88	+1.3
2,870,655	+		PFLU_RS12695	0.88	+1.3
2,870,655	+		PFLU_RS12695	0.88	+0.5
2,870,655	+		PFLU_RS12695	0.88	+0.6
2,870,655	+		PFLU_RS12695	0.88	+0.5
2,870,655	+		PFLU_RS12695	0.88	-1.5
2,870,655	+		PFLU_RS12695	0.88	-0.8
2,870,656	-		PFLU_RS12695	0.88	+0.9
2,870,656	-		PFLU_RS12695	0.88	-0.4
2,870,656	-		PFLU_RS12695	0.88	+0.2
2,870,656	-		PFLU_RS12695	0.88	+0.1
2,870,656	-		PFLU_RS12695	0.88	-0.7
2,870,656	-		PFLU_RS12695	0.88	+0.8
2,870,760	+				-0.9
2,870,761	-				-1.7
2,870,787	+				+0.4
2,870,788	-				+0.5
2,870,804	+				-2.2
2,870,804	+				+3.2
2,870,865	+				-2.7
2,870,866	-				-0.3
2,870,866	-				+2.0
2,870,866	-				-0.8
2,870,880	+				-0.0
2,870,881	-				+1.2
2,870,881	-				+0.1
2,870,901	+				-1.5
2,870,937	+				+1.6
2,870,937	+				-1.8
2,870,937	+				+0.5
2,870,938	-				+0.1
2,870,938	-				-1.9
2,870,960	+				+2.1
2,870,960	+				+0.4
2,870,961	-				-2.1
2,870,961	-				+1.2
2,870,961	-				+0.0
2,871,130	+		PFLU_RS12700	0.27	+1.4
2,871,130	+		PFLU_RS12700	0.27	+1.9
2,871,130	+		PFLU_RS12700	0.27	-2.7
2,871,130	+		PFLU_RS12700	0.27	+2.1
2,871,130	+		PFLU_RS12700	0.27	+0.2
2,871,130	+		PFLU_RS12700	0.27	+0.6
2,871,130	+		PFLU_RS12700	0.27	-2.2
2,871,130	+		PFLU_RS12700	0.27	-0.5
2,871,130	+		PFLU_RS12700	0.27	+0.8
2,871,130	+		PFLU_RS12700	0.27	-2.9
2,871,130	+		PFLU_RS12700	0.27	-0.4
2,871,130	+		PFLU_RS12700	0.27	-2.1
2,871,130	+		PFLU_RS12700	0.27	+1.1
2,871,130	+		PFLU_RS12700	0.27	+2.1
2,871,130	+		PFLU_RS12700	0.27	-2.1
2,871,130	+		PFLU_RS12700	0.27	-2.4
2,871,131	-		PFLU_RS12700	0.28	-1.5
2,871,131	-		PFLU_RS12700	0.28	+0.4
2,871,131	-		PFLU_RS12700	0.28	-1.5
2,871,131	-		PFLU_RS12700	0.28	+1.9
2,871,131	-		PFLU_RS12700	0.28	-0.9
2,871,131	-		PFLU_RS12700	0.28	+0.7
2,871,131	-		PFLU_RS12700	0.28	+2.0
2,871,131	-		PFLU_RS12700	0.28	+0.4
2,871,131	-		PFLU_RS12700	0.28	-0.1
2,871,131	-		PFLU_RS12700	0.28	+0.3
2,871,131	-		PFLU_RS12700	0.28	-1.5
2,871,131	-		PFLU_RS12700	0.28	-1.2
2,871,131	-		PFLU_RS12700	0.28	-0.9
2,871,131	-		PFLU_RS12700	0.28	-0.4
2,871,131	-		PFLU_RS12700	0.28	-2.6
2,871,131	-		PFLU_RS12700	0.28	+0.6
2,871,131	-		PFLU_RS12700	0.28	-0.3
2,871,131	-		PFLU_RS12700	0.28	-2.9
2,871,131	-		PFLU_RS12700	0.28	+2.1
2,871,131	-		PFLU_RS12700	0.28	-1.7
2,871,131	-		PFLU_RS12700	0.28	-0.0
2,871,131	-		PFLU_RS12700	0.28	+2.4
2,871,199	+		PFLU_RS12700	0.48	+1.3
2,871,284	-		PFLU_RS12700	0.74	-0.6
2,871,284	-		PFLU_RS12700	0.74	+1.6
2,871,331	+		PFLU_RS12700	0.88	-0.4
2,871,350	-				+0.1
2,871,351	+				-2.3
2,871,352	-				-1.5
2,871,352	-				-2.0
2,871,363	+				+1.9
2,871,363	+				-1.0
2,871,364	-				-1.7
2,871,411	+				-0.6
2,871,430	+				+1.2
2,871,430	+				-0.8
2,871,430	+				-1.5
2,871,456	+				+0.3
2,871,554	+		PFLU_RS12705	0.20	-0.0
2,871,555	-		PFLU_RS12705	0.20	+1.0
2,871,564	-		PFLU_RS12705	0.21	+0.1
2,871,564	-		PFLU_RS12705	0.21	+2.6
2,871,610	+		PFLU_RS12705	0.26	+1.1
2,871,610	+		PFLU_RS12705	0.26	+1.8
2,871,610	+		PFLU_RS12705	0.26	-1.7
2,871,611	-		PFLU_RS12705	0.26	-2.5