Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS11725

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,601,467	+				-0.3
2,601,468	-				+0.3
2,601,468	-				-0.4
2,601,483	+				-1.5
2,601,484	-				+0.0
2,601,487	+				+1.8
2,601,488	-				-0.9
2,601,488	-				-0.8
2,601,488	-				-0.2
2,601,488	-				+1.2
2,601,528	+				+2.2
2,601,529	-				+1.9
2,601,529	-				-0.5
2,601,532	+				-0.5
2,601,532	+				-0.0
2,601,532	+				-1.0
2,601,532	+				-2.4
2,601,533	-				-1.0
2,601,533	-				+0.7
2,601,533	-				+0.3
2,601,600	+		PFLU_RS11720	0.23	-0.0
2,601,600	+		PFLU_RS11720	0.23	-0.3
2,601,601	-		PFLU_RS11720	0.24	+0.9
2,601,700	+		PFLU_RS11720	0.57	-0.9
2,601,701	-		PFLU_RS11720	0.57	+0.3
2,601,701	-		PFLU_RS11720	0.57	+1.4
2,601,764	-		PFLU_RS11720	0.78	-1.4
2,601,764	-		PFLU_RS11720	0.78	+0.0
2,601,832	+				-1.8
2,601,832	+				-0.5
2,601,833	-				-0.2
2,601,833	-				+2.2
2,601,833	-				-0.4
2,601,833	-				+0.4
2,601,833	-				-2.1
2,601,873	-				+2.9
2,601,878	+				-0.4
2,601,878	+				+0.3
2,601,878	+				+0.6
2,601,879	-				-1.6
2,601,892	+				+1.4
2,601,892	+				-0.9
2,601,893	-				+0.8
2,601,963	+				+1.4
2,601,963	+				+0.2
2,601,963	+				-1.3
2,602,046	+				-1.7
2,602,132	+				-1.0
2,602,188	-				+0.5
2,602,188	-				-0.9
2,602,229	+				+0.7
2,602,230	-				+0.4
2,602,230	-				-0.5
2,602,230	-				-2.3
2,602,284	+				+0.8
2,602,284	+				-0.9
2,602,285	-				-1.3
2,602,285	-				-1.8
2,602,285	-				-1.6
2,602,368	+				-1.8
2,602,368	+				-0.8
2,602,369	-				+1.5
2,602,369	-				-0.7
2,602,369	-				-1.5
2,602,369	-				-0.9
2,602,370	+				+0.6
2,602,370	+				-0.7
2,602,370	+				-0.9
2,602,370	+				-1.2
2,602,370	+				+1.4
2,602,370	+				+1.8
2,602,370	+				-1.0
2,602,370	+				+1.2
2,602,370	+				-2.4
2,602,370	+				-0.4
2,602,370	+				+1.1
2,602,370	+				-0.6
2,602,370	+				-1.4
2,602,370	+				-2.3
2,602,370	+				-0.6
2,602,370	+				-0.3
2,602,370	+				+0.9
2,602,370	+				+0.8
2,602,370	+				+1.5
2,602,370	+				-2.2
2,602,371	-				+0.8
2,602,371	-				-0.4
2,602,371	-				-1.9
2,602,371	-				-2.0
2,602,371	-				-1.4
2,602,371	-				-1.4
2,602,371	-				-1.0
2,602,371	-				-2.6
2,602,371	-				-0.8
2,602,371	-				-1.1
2,602,371	-				+1.8
2,602,371	-				-0.1
2,602,371	-				-2.8
2,602,371	-				-0.1
2,602,371	-				-2.9
2,602,371	-				+1.0
2,602,371	-				-1.7
2,602,371	-				-2.8
2,602,371	-				+1.2
2,602,371	-				+0.8
2,602,371	-				-1.8
2,602,371	-				+0.7
2,602,371	-				-2.0
2,602,371	-				+0.9
2,602,371	-				+0.5
2,602,372	+				-0.4
2,602,372	+				+2.0
2,602,372	+				-1.0
2,602,372	+				+1.5
2,602,372	+				+0.5
2,602,372	+				-1.2
2,602,372	+				+1.4
2,602,372	+				-0.2
2,602,372	+				+0.8
2,602,372	+				-1.2
2,602,372	+				+1.4
2,602,373	-				-1.0
2,602,373	-				+1.3
2,602,373	-				-0.8
2,602,373	-				+1.7
2,602,373	-				-0.7
2,602,373	-				-0.2
2,602,373	-				+2.9
2,602,373	-				+0.6
2,602,373	-				+0.8
2,602,373	-				-0.3
2,602,373	-				-1.9
2,602,373	-				+2.3
2,602,373	-				+0.2
2,602,493	-		PFLU_RS11725	0.15	-0.2
2,602,745	-		PFLU_RS11725	0.39	+3.1
2,602,891	+		PFLU_RS11725	0.53	-2.3
2,602,891	+		PFLU_RS11725	0.53	-0.5
2,602,891	+		PFLU_RS11725	0.53	+1.5
2,603,077	+		PFLU_RS11725	0.70	-2.5
2,603,078	-		PFLU_RS11725	0.70	-0.2
2,603,078	-		PFLU_RS11725	0.70	+0.9
2,603,078	-		PFLU_RS11725	0.70	+0.4
2,603,078	-		PFLU_RS11725	0.70	+1.1
2,603,152	+		PFLU_RS11725	0.77	-0.7
2,603,152	+		PFLU_RS11725	0.77	+2.3
2,603,152	+		PFLU_RS11725	0.77	-2.6
2,603,152	+		PFLU_RS11725	0.77	-0.1
2,603,152	+		PFLU_RS11725	0.77	-1.1
2,603,152	+		PFLU_RS11725	0.77	-2.7
2,603,153	-		PFLU_RS11725	0.77	+1.5
2,603,153	-		PFLU_RS11725	0.77	+0.9
2,603,153	-		PFLU_RS11725	0.77	+0.2
2,603,194	+		PFLU_RS11725	0.81	+0.1
2,603,245	+		PFLU_RS11725	0.86	+1.3
2,603,317	-				+1.4
2,603,418	-				+1.4
2,603,451	+				+0.1
2,603,459	+				-0.0
2,603,502	+				+0.8
2,603,502	+				+2.4
2,603,524	+				-2.3
2,603,525	-				+0.6
2,603,551	-				-1.4
2,603,591	+				-0.8
2,603,592	-				+0.4
2,603,592	-				+1.3
2,603,674	+		PFLU_RS11730	0.11	+2.4
2,603,816	+		PFLU_RS11730	0.24	+1.4
2,603,829	-		PFLU_RS11730	0.25	+0.8
2,604,200	+		PFLU_RS11730	0.59	-0.6
2,604,201	-		PFLU_RS11730	0.59	-2.8
2,604,201	-		PFLU_RS11730	0.59	-0.0
2,604,201	-		PFLU_RS11730	0.59	-0.5
2,604,227	+		PFLU_RS11730	0.61	+0.8
2,604,227	+		PFLU_RS11730	0.61	-3.2
2,604,227	+		PFLU_RS11730	0.61	-1.4
2,604,228	-		PFLU_RS11730	0.61	-1.0
2,604,228	-		PFLU_RS11730	0.61	-1.7
2,604,276	-		PFLU_RS11730	0.66	+0.1
2,604,294	-		PFLU_RS11730	0.67	+1.2
2,604,352	+		PFLU_RS11730	0.73	+2.3
2,604,368	+		PFLU_RS11730	0.74	-2.3
2,604,368	+		PFLU_RS11730	0.74	+0.5
2,604,368	+		PFLU_RS11730	0.74	-1.5
2,604,368	+		PFLU_RS11730	0.74	-0.9
2,604,369	-		PFLU_RS11730	0.74	+1.2
2,604,369	-		PFLU_RS11730	0.74	-0.0
2,604,369	-		PFLU_RS11730	0.74	+0.9
2,604,369	-		PFLU_RS11730	0.74	+0.4
2,604,369	-		PFLU_RS11730	0.74	+0.4
2,604,369	-		PFLU_RS11730	0.74	-0.9
2,604,369	-		PFLU_RS11730	0.74	-0.5
2,604,391	+		PFLU_RS11730	0.76	+2.0