Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS11115

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,449,878	+				-1.9
2,449,947	+				+1.0
2,449,947	+				-0.8
2,449,947	+				+1.6
2,449,948	-		PFLU_RS11110	0.10	-0.4
2,449,948	-		PFLU_RS11110	0.10	-2.5
2,449,997	+		PFLU_RS11110	0.18	-1.4
2,450,008	-		PFLU_RS11110	0.20	-0.2
2,450,017	-		PFLU_RS11110	0.21	-2.9
2,450,101	-		PFLU_RS11110	0.34	+1.2
2,450,118	+		PFLU_RS11110	0.37	+0.1
2,450,140	+		PFLU_RS11110	0.41	+0.8
2,450,141	-		PFLU_RS11110	0.41	-2.2
2,450,157	+		PFLU_RS11110	0.43	+1.9
2,450,158	-		PFLU_RS11110	0.44	+0.9
2,450,158	-		PFLU_RS11110	0.44	+1.0
2,450,203	+		PFLU_RS11110	0.51	+0.0
2,450,203	+		PFLU_RS11110	0.51	-0.1
2,450,203	+		PFLU_RS11110	0.51	-0.9
2,450,203	+		PFLU_RS11110	0.51	-0.4
2,450,203	+		PFLU_RS11110	0.51	+0.5
2,450,203	+		PFLU_RS11110	0.51	-2.2
2,450,203	+		PFLU_RS11110	0.51	+0.2
2,450,203	+		PFLU_RS11110	0.51	-1.2
2,450,203	+		PFLU_RS11110	0.51	+0.3
2,450,203	+		PFLU_RS11110	0.51	-0.7
2,450,204	-		PFLU_RS11110	0.51	-2.2
2,450,204	-		PFLU_RS11110	0.51	+1.4
2,450,204	-		PFLU_RS11110	0.51	+1.9
2,450,204	-		PFLU_RS11110	0.51	+2.3
2,450,204	-		PFLU_RS11110	0.51	-2.1
2,450,204	-		PFLU_RS11110	0.51	+0.3
2,450,205	+		PFLU_RS11110	0.51	+1.1
2,450,205	+		PFLU_RS11110	0.51	-0.2
2,450,205	+		PFLU_RS11110	0.51	+1.7
2,450,206	-		PFLU_RS11110	0.51	-1.2
2,450,206	-		PFLU_RS11110	0.51	-0.1
2,450,206	-		PFLU_RS11110	0.51	+1.0
2,450,229	+		PFLU_RS11110	0.55	-1.5
2,450,269	+		PFLU_RS11110	0.61	+0.6
2,450,270	-		PFLU_RS11110	0.61	+0.8
2,450,338	+		PFLU_RS11110	0.72	+0.1
2,450,339	-		PFLU_RS11110	0.72	-0.2
2,450,339	-		PFLU_RS11110	0.72	+3.9
2,450,401	+		PFLU_RS11110	0.82	-1.2
2,450,402	-		PFLU_RS11110	0.82	-1.4
2,450,402	-		PFLU_RS11110	0.82	-0.9
2,450,402	-		PFLU_RS11110	0.82	-0.6
2,450,403	+		PFLU_RS11110	0.83	+0.1
2,450,403	+		PFLU_RS11110	0.83	+1.7
2,450,404	-		PFLU_RS11110	0.83	-2.6
2,450,404	-		PFLU_RS11110	0.83	+1.1
2,450,404	-		PFLU_RS11110	0.83	+0.3
2,450,415	+		PFLU_RS11110	0.85	+0.2
2,450,416	-		PFLU_RS11110	0.85	-0.9
2,450,509	+				+0.2
2,450,509	+				+0.2
2,450,587	+				-0.4
2,450,588	-				+0.0
2,450,588	-				-0.1
2,450,588	-				-1.2
2,450,588	-				-0.2
2,450,588	-				+0.0
2,450,591	-				+2.3
2,450,591	-				+1.2
2,450,591	-				+1.0
2,450,591	-				+0.9
2,450,591	-				+0.7
2,450,591	-				+0.3
2,450,674	+				+0.6
2,450,679	+				+1.2
2,450,680	-				+0.9
2,450,680	-				-1.2
2,450,680	-				+2.3
2,450,787	+				+2.3
2,450,787	+				-2.8
2,450,787	+				+0.1
2,450,787	+				-1.1
2,450,787	+				+2.5
2,450,788	-				+0.4
2,450,788	-				+0.5
2,450,788	-				-2.2
2,450,817	+				+3.1
2,450,817	+				-1.1
2,450,817	+				-2.7
2,450,817	+				-1.9
2,450,817	+				+3.9
2,450,818	-				-2.7
2,450,818	-				+1.5
2,450,818	-				-2.5
2,450,818	-				+0.8
2,450,818	-				-1.4
2,450,867	+				-3.0
2,450,868	-				-0.5
2,450,911	+				+1.2
2,450,911	+				-1.0
2,450,911	+				-0.2
2,450,912	-				-0.8
2,450,912	-				-0.5
2,450,912	-				-1.8
2,451,061	+		PFLU_RS11115	0.15	+1.7
2,451,790	+		PFLU_RS11115	0.60	+0.6
2,451,790	+		PFLU_RS11115	0.60	+0.4
2,451,791	-		PFLU_RS11115	0.60	+0.9
2,451,794	-		PFLU_RS11115	0.60	+0.8
2,451,808	+		PFLU_RS11115	0.61	-1.9
2,451,808	+		PFLU_RS11115	0.61	+0.5
2,451,809	-		PFLU_RS11115	0.61	-0.3
2,451,953	-		PFLU_RS11115	0.70	+0.9
2,451,958	+		PFLU_RS11115	0.70	+1.8
2,451,958	+		PFLU_RS11115	0.70	+2.1
2,451,958	+		PFLU_RS11115	0.70	+0.4
2,451,958	+		PFLU_RS11115	0.70	+1.9
2,451,958	+		PFLU_RS11115	0.70	-1.4
2,451,958	+		PFLU_RS11115	0.70	+0.3
2,451,959	-		PFLU_RS11115	0.70	-2.6
2,451,959	-		PFLU_RS11115	0.70	-1.0
2,451,959	-		PFLU_RS11115	0.70	-0.3
2,451,959	-		PFLU_RS11115	0.70	-1.1
2,451,959	-		PFLU_RS11115	0.70	+0.1
2,451,959	-		PFLU_RS11115	0.70	-0.7
2,451,959	-		PFLU_RS11115	0.70	+2.4
2,451,959	-		PFLU_RS11115	0.70	+0.8
2,452,299	+				+1.7
2,452,303	+				-0.8
2,452,303	+				-0.5
2,452,303	+				-0.1
2,452,303	+				+2.2
2,452,304	-				-1.2
2,452,350	+				-0.2
2,452,350	+				+0.8
2,452,350	+				-2.2
2,452,379	+				+2.6
2,452,405	-				-2.2
2,452,421	-				-1.6
2,452,473	+				-2.1
2,452,473	+				-2.7
2,452,474	-				-0.2
2,452,475	+				+0.5
2,452,475	+				+1.5
2,452,475	+				-1.5
2,452,475	+				+2.2
2,452,476	-				-1.2
2,452,476	-				+0.3
2,452,476	-				+1.0
2,452,476	-				+0.2
2,452,476	-				+0.1
2,452,476	-				-2.4
2,452,476	-				-1.8
2,452,476	-				-2.1
2,452,476	-				+0.8
2,452,476	-				+1.3
2,452,476	-				+1.4
2,452,476	-				-1.5
2,452,477	+				-2.2
2,452,477	+				-1.8
2,452,478	-				-1.0
2,452,478	-				+1.2
2,452,523	+				-0.9
2,452,523	+				+0.1
2,452,523	+				-0.2
2,452,524	-				-1.2
2,452,524	-				-0.5
2,452,524	-				-0.5
2,452,524	-				+0.9
2,452,579	+				-0.9
2,452,612	-				-0.4
2,452,636	+				-1.2
2,452,636	+				+3.1
2,452,637	-				-2.9
2,452,637	-				-3.0
2,452,637	-				+1.9
2,452,637	-				+0.1
2,452,637	-				-1.8
2,452,637	-				+1.2
2,452,637	-				+0.3
2,452,637	-				-1.2
2,452,638	+				+1.1
2,452,713	+				+0.6
2,452,713	+				+0.4
2,452,713	+				-2.5
2,452,714	-				-0.2
2,452,730	-				+1.2
2,452,746	-				+0.1
2,452,776	+				+1.5
2,452,870	+		PFLU_RS31555	0.16	+0.1
2,452,877	+		PFLU_RS31555	0.23	+0.9
2,452,880	+		PFLU_RS31555	0.25	-1.8
2,452,880	+		PFLU_RS31555	0.25	+0.3
2,452,880	+		PFLU_RS31555	0.25	+0.3
2,452,880	+		PFLU_RS31555	0.25	+0.9
2,452,880	+		PFLU_RS31555	0.25	+1.5
2,452,880	+		PFLU_RS31555	0.25	-1.5
2,452,880	+		PFLU_RS31555	0.25	+0.3
2,452,881	-		PFLU_RS31555	0.26	+0.9
2,452,881	-		PFLU_RS31555	0.26	+3.5
2,452,881	-		PFLU_RS31555	0.26	+1.0
2,452,881	-		PFLU_RS31555	0.26	-2.7
2,452,881	-		PFLU_RS31555	0.26	+0.9
2,452,998	+				-1.8
2,452,998	+				+0.6
2,452,999	-				-1.2
2,453,011	-				+0.9
2,453,027	+				+1.6
2,453,028	-				+1.1
2,453,028	-				+0.6
2,453,037	+				+0.1
2,453,037	+				+0.9
2,453,037	+				-0.7
2,453,037	+				-0.1
2,453,037	+				-0.5
2,453,037	+				+1.7
2,453,037	+				-0.7
2,453,037	+				-1.7
2,453,038	-				-1.1
2,453,038	-				+0.4
2,453,038	-				+0.5
2,453,038	-				-1.5
2,453,038	-				+1.2
2,453,038	-				-0.1
2,453,038	-				+0.1
2,453,038	-				-1.8
2,453,070	+				+3.2
2,453,071	-				-0.6
2,453,071	-				+2.8
2,453,080	+				+1.8
2,453,107	+				-1.8
2,453,133	+				-0.4
2,453,133	+				+1.2
2,453,133	+				+1.1
2,453,150	+				+0.4
2,453,151	-				-0.7
2,453,151	-				-1.4
2,453,156	+				+1.3
2,453,156	+				+1.1
2,453,156	+				+1.7
2,453,156	+				-1.1
2,453,156	+				+2.1
2,453,156	+				-0.3
2,453,156	+				-1.8
2,453,157	-				-0.2
2,453,179	+				+2.3
2,453,179	+				-0.6
2,453,179	+				+1.6
2,453,179	+				+0.5
2,453,202	+				+0.8
2,453,202	+				-0.9
2,453,202	+				-3.4
2,453,202	+				-3.4
2,453,202	+				-0.4
2,453,203	-				-2.7
2,453,222	+				+0.7
2,453,222	+				+1.6
2,453,223	-				+1.2
2,453,223	-				+2.0
2,453,223	-				+0.1
2,453,223	-				-0.4
2,453,229	+				+0.9
2,453,229	+				+1.5
2,453,229	+				+2.6
2,453,229	+				+0.1
2,453,229	+				-0.7
2,453,229	+				-0.9
2,453,230	-				+0.3
2,453,230	-				+0.9
2,453,230	-				+1.2
2,453,230	-				-1.9
2,453,233	+				-1.1
2,453,233	+				+1.5
2,453,234	-				+0.4
2,453,234	-				-1.4
2,453,278	+				+1.3
2,453,278	+				+0.4
2,453,279	-				-0.2
2,453,279	-				-1.4
2,453,341	+		PFLU_RS11120	0.17	-1.7
2,453,342	-		PFLU_RS11120	0.17	+0.3