Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08220

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,837,223	+		PFLU_RS08215	0.65	-0.8
1,837,223	+		PFLU_RS08215	0.65	-2.1
1,837,319	+		PFLU_RS08215	0.72	+0.4
1,837,320	-		PFLU_RS08215	0.72	+2.4
1,837,320	-		PFLU_RS08215	0.72	-1.6
1,837,321	+		PFLU_RS08215	0.72	+1.3
1,837,321	+		PFLU_RS08215	0.72	-3.3
1,837,321	+		PFLU_RS08215	0.72	-1.6
1,837,321	+		PFLU_RS08215	0.72	+1.9
1,837,321	+		PFLU_RS08215	0.72	+1.7
1,837,321	+		PFLU_RS08215	0.72	-1.4
1,837,321	+		PFLU_RS08215	0.72	-0.6
1,837,321	+		PFLU_RS08215	0.72	-3.1
1,837,321	+		PFLU_RS08215	0.72	-0.1
1,837,322	-		PFLU_RS08215	0.72	+1.4
1,837,322	-		PFLU_RS08215	0.72	-2.3
1,837,322	-		PFLU_RS08215	0.72	-1.1
1,837,322	-		PFLU_RS08215	0.72	-1.1
1,837,322	-		PFLU_RS08215	0.72	-1.4
1,837,322	-		PFLU_RS08215	0.72	+1.1
1,837,480	+		PFLU_RS08215	0.83	-1.8
1,837,481	-		PFLU_RS08215	0.83	-0.8
1,837,538	+		PFLU_RS08215	0.88	-0.2
1,837,539	-		PFLU_RS08215	0.88	-0.8
1,837,539	-		PFLU_RS08215	0.88	+1.9
1,837,539	-		PFLU_RS08215	0.88	+0.9
1,837,539	-		PFLU_RS08215	0.88	-1.7
1,837,549	+		PFLU_RS08215	0.88	-0.1
1,837,549	+		PFLU_RS08215	0.88	+0.1
1,837,549	+		PFLU_RS08215	0.88	-0.4
1,837,549	+		PFLU_RS08215	0.88	-0.4
1,837,549	+		PFLU_RS08215	0.88	-3.7
1,837,549	+		PFLU_RS08215	0.88	-0.3
1,837,549	+		PFLU_RS08215	0.88	+1.4
1,837,549	+		PFLU_RS08215	0.88	+0.7
1,837,549	+		PFLU_RS08215	0.88	+1.5
1,837,549	+		PFLU_RS08215	0.88	+0.8
1,837,549	+		PFLU_RS08215	0.88	+0.2
1,837,549	+		PFLU_RS08215	0.88	+2.0
1,837,549	+		PFLU_RS08215	0.88	+0.6
1,837,550	-		PFLU_RS08215	0.88	-0.6
1,837,550	-		PFLU_RS08215	0.88	-0.3
1,837,550	-		PFLU_RS08215	0.88	+1.3
1,837,550	-		PFLU_RS08215	0.88	-1.0
1,837,550	-		PFLU_RS08215	0.88	+0.7
1,837,550	-		PFLU_RS08215	0.88	+2.1
1,837,550	-		PFLU_RS08215	0.88	+1.0
1,837,550	-		PFLU_RS08215	0.88	-1.6
1,837,550	-		PFLU_RS08215	0.88	+1.4
1,837,612	+				-1.5
1,837,612	+				+0.9
1,837,612	+				+0.9
1,837,613	-				+0.9
1,837,613	-				+1.2
1,837,613	-				+1.2
1,837,628	-				+1.2
1,837,659	-				+3.5
1,837,665	+				+1.8
1,837,665	+				+1.9
1,837,665	+				+0.5
1,837,666	-				-1.4
1,837,782	+				-0.9
1,837,782	+				-0.0
1,837,783	-				+1.2
1,837,783	-				+1.9
1,837,848	-				+0.0
1,837,848	-				+0.0
1,837,848	-				+2.8
1,837,848	-				+2.4
1,837,848	-				+1.8
1,837,911	+				+0.0
1,837,911	+				+1.2
1,837,912	-				+1.2
1,837,912	-				-1.3
1,837,912	-				-0.3
1,837,912	-				+1.2
1,837,991	-				-2.4
1,838,047	+				+0.6
1,838,047	+				-0.5
1,838,047	+				-0.4
1,838,047	+				-1.7
1,838,048	-				-1.1
1,838,073	+				-1.5
1,838,137	+		PFLU_RS08220	0.31	-1.7
1,838,137	+		PFLU_RS08220	0.31	-1.6
1,838,138	-		PFLU_RS08220	0.32	-1.9
1,838,160	+		PFLU_RS08220	0.57	-1.9
1,838,160	+		PFLU_RS08220	0.57	-1.0
1,838,161	-		PFLU_RS08220	0.58	-0.3
1,838,180	-		PFLU_RS08220	0.79	-1.1
1,838,196	+				-2.0
1,838,197	-				-0.6
1,838,197	-				+1.2
1,838,197	-				+0.7
1,838,197	-				-1.2
1,838,197	-				+0.0
1,838,207	+				-0.7
1,838,208	-				+1.5
1,838,208	-				-0.2
1,838,217	+				+0.4
1,838,217	+				+1.1
1,838,217	+				+2.5
1,838,217	+				+1.0
1,838,217	+				-0.9
1,838,217	+				-0.3
1,838,217	+				-1.3
1,838,218	-				-0.4
1,838,218	-				+1.4
1,838,218	-				-0.3
1,838,218	-				-0.9
1,838,218	-				+0.7
1,838,218	-				-1.4
1,838,218	-				+0.0
1,838,223	+				-1.7
1,838,224	-				-1.6
1,838,255	-				+1.2
1,838,255	-				-1.0
1,838,286	+				-1.1
1,838,286	+				+0.1
1,838,286	+				+0.8
1,838,286	+				-0.8
1,838,286	+				+1.6
1,838,286	+				-0.4
1,838,286	+				-0.7
1,838,287	-				+0.2
1,838,287	-				+1.5
1,838,287	-				+1.2
1,838,287	-				-2.0
1,838,289	+				+0.8
1,838,289	+				+0.9
1,838,289	+				+0.4
1,838,289	+				-2.6
1,838,290	-				+1.7
1,838,290	-				-0.0
1,838,290	-				-1.3
1,838,290	-				+0.1
1,838,290	-				+0.6
1,838,290	-				-2.3
1,838,290	-				+2.5
1,838,403	+		PFLU_RS08225	0.12	-1.7
1,838,403	+		PFLU_RS08225	0.12	+0.0
1,838,403	+		PFLU_RS08225	0.12	+1.9
1,838,403	+		PFLU_RS08225	0.12	+1.1
1,838,403	+		PFLU_RS08225	0.12	-1.0
1,838,403	+		PFLU_RS08225	0.12	-1.3
1,838,403	+		PFLU_RS08225	0.12	+0.2
1,838,403	+		PFLU_RS08225	0.12	+1.1
1,838,404	-		PFLU_RS08225	0.12	+0.6
1,838,404	-		PFLU_RS08225	0.12	-0.1
1,838,404	-		PFLU_RS08225	0.12	-0.4
1,838,404	-		PFLU_RS08225	0.12	+1.7
1,838,404	-		PFLU_RS08225	0.12	+2.2
1,838,404	-		PFLU_RS08225	0.12	-1.7
1,838,404	-		PFLU_RS08225	0.12	-1.8
1,838,475	+		PFLU_RS08225	0.16	+1.5
1,838,475	+		PFLU_RS08225	0.16	-0.6
1,838,475	+		PFLU_RS08225	0.16	+0.2
1,838,476	-		PFLU_RS08225	0.16	+0.3
1,838,476	-		PFLU_RS08225	0.16	-2.1
1,838,476	-		PFLU_RS08225	0.16	+2.6
1,838,476	-		PFLU_RS08225	0.16	+1.5
1,838,476	-		PFLU_RS08225	0.16	-1.6
1,838,476	-		PFLU_RS08225	0.16	+0.8
1,838,572	-		PFLU_RS08225	0.21	-0.5
1,838,572	-		PFLU_RS08225	0.21	-0.6
1,838,572	-		PFLU_RS08225	0.21	-0.7
1,838,572	-		PFLU_RS08225	0.21	+1.7
1,838,595	+		PFLU_RS08225	0.23	+1.0
1,838,595	+		PFLU_RS08225	0.23	-1.1
1,838,595	+		PFLU_RS08225	0.23	+0.3
1,838,596	-		PFLU_RS08225	0.23	+1.6
1,838,726	+		PFLU_RS08225	0.31	-0.4
1,838,745	+		PFLU_RS08225	0.32	+1.3
1,838,820	+		PFLU_RS08225	0.36	+1.7
1,838,821	-		PFLU_RS08225	0.36	-1.6
1,838,821	-		PFLU_RS08225	0.36	+0.2
1,838,821	-		PFLU_RS08225	0.36	-1.4
1,838,821	-		PFLU_RS08225	0.36	+1.1
1,839,036	+		PFLU_RS08225	0.49	-0.0
1,839,036	+		PFLU_RS08225	0.49	+1.0
1,839,036	+		PFLU_RS08225	0.49	-0.8
1,839,036	+		PFLU_RS08225	0.49	-1.9
1,839,037	-		PFLU_RS08225	0.49	-0.5
1,839,037	-		PFLU_RS08225	0.49	+0.1
1,839,037	-		PFLU_RS08225	0.49	+2.2
1,839,037	-		PFLU_RS08225	0.49	-0.6
1,839,037	-		PFLU_RS08225	0.49	-1.4