Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07915

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,763,835	-		PFLU_RS07905	0.30	-2.0
1,763,835	-		PFLU_RS07905	0.30	+1.3
1,763,835	-		PFLU_RS07905	0.30	+1.5
1,763,835	-		PFLU_RS07905	0.30	+0.9
1,763,835	-		PFLU_RS07905	0.30	+1.8
1,763,861	+		PFLU_RS07905	0.34	+2.0
1,763,861	+		PFLU_RS07905	0.34	-0.4
1,763,861	+		PFLU_RS07905	0.34	+1.0
1,763,861	+		PFLU_RS07905	0.34	+1.4
1,763,861	+		PFLU_RS07905	0.34	+3.1
1,763,861	+		PFLU_RS07905	0.34	-0.8
1,763,862	-		PFLU_RS07905	0.34	+0.5
1,763,862	-		PFLU_RS07905	0.34	-1.8
1,763,862	-		PFLU_RS07905	0.34	-0.4
1,763,862	-		PFLU_RS07905	0.34	+0.3
1,764,029	+		PFLU_RS07905	0.60	-0.1
1,764,064	-		PFLU_RS07905	0.65	-0.6
1,764,064	-		PFLU_RS07905	0.65	-0.3
1,764,132	+		PFLU_RS07905	0.76	-2.0
1,764,132	+		PFLU_RS07905	0.76	-1.3
1,764,260	+				+0.7
1,764,260	+				-0.1
1,764,260	+				-0.2
1,764,260	+				+2.7
1,764,261	-				+0.9
1,764,261	-				+0.0
1,764,261	-				+0.9
1,764,261	-				-1.7
1,764,261	-				-2.9
1,764,261	-				+1.7
1,764,261	-				+0.1
1,764,297	+				+0.2
1,764,298	-				+2.1
1,764,298	-				+3.1
1,764,327	+				+1.1
1,764,327	+				-2.0
1,764,327	+				+2.1
1,764,328	-				+2.2
1,764,328	-				+1.3
1,764,328	-				-3.2
1,764,328	-				-1.8
1,764,328	-				+2.5
1,764,517	+		PFLU_RS07910	0.46	-0.3
1,764,765	-				-0.4
1,764,784	+				-1.7
1,764,784	+				+0.8
1,764,784	+				+1.1
1,764,784	+				+1.4
1,764,785	-				-1.4
1,764,785	-				-0.9
1,764,785	-				-0.6
1,764,785	-				-1.1
1,764,788	+				-1.1
1,764,788	+				+1.0
1,764,788	+				+1.2
1,764,788	+				-0.0
1,764,788	+				-0.4
1,764,789	-				+2.1
1,764,789	-				+1.1
1,764,789	-				-2.1
1,764,789	-				+2.1
1,764,789	-				+0.7
1,764,789	-				-0.3
1,764,789	-				-1.5
1,764,789	-				+3.9
1,764,789	-				+0.3
1,764,789	-				-1.7
1,764,789	-				+1.0
1,764,886	-		PFLU_RS07915	0.22	-3.1
1,764,896	+		PFLU_RS07915	0.25	-2.3
1,764,896	+		PFLU_RS07915	0.25	-0.4
1,764,896	+		PFLU_RS07915	0.25	-0.4
1,764,896	+		PFLU_RS07915	0.25	-2.4
1,764,896	+		PFLU_RS07915	0.25	-1.8
1,764,896	+		PFLU_RS07915	0.25	-2.0
1,764,896	+		PFLU_RS07915	0.25	+0.0
1,764,896	+		PFLU_RS07915	0.25	-2.7
1,764,896	+		PFLU_RS07915	0.25	-0.0
1,764,897	-		PFLU_RS07915	0.25	+0.1
1,764,897	-		PFLU_RS07915	0.25	-0.4
1,764,897	-		PFLU_RS07915	0.25	-3.2
1,764,897	-		PFLU_RS07915	0.25	-1.4
1,764,897	-		PFLU_RS07915	0.25	-0.4
1,764,897	-		PFLU_RS07915	0.25	-2.3
1,764,897	-		PFLU_RS07915	0.25	+0.4
1,764,978	+		PFLU_RS07915	0.42	-1.4
1,764,978	+		PFLU_RS07915	0.42	-1.3
1,764,979	-		PFLU_RS07915	0.42	+0.9
1,764,995	+		PFLU_RS07915	0.46	+0.5
1,764,995	+		PFLU_RS07915	0.46	+1.2
1,764,995	+		PFLU_RS07915	0.46	+0.4
1,764,995	+		PFLU_RS07915	0.46	+0.5
1,764,995	+		PFLU_RS07915	0.46	-0.6
1,764,995	+		PFLU_RS07915	0.46	-2.3
1,764,995	+		PFLU_RS07915	0.46	+0.1
1,764,995	+		PFLU_RS07915	0.46	+0.6
1,764,995	+		PFLU_RS07915	0.46	-0.3
1,764,995	+		PFLU_RS07915	0.46	+2.2
1,764,995	+		PFLU_RS07915	0.46	+1.7
1,764,995	+		PFLU_RS07915	0.46	+3.0
1,764,995	+		PFLU_RS07915	0.46	-2.2
1,764,996	-		PFLU_RS07915	0.46	-0.1
1,764,996	-		PFLU_RS07915	0.46	+1.7
1,764,996	-		PFLU_RS07915	0.46	-0.1
1,764,996	-		PFLU_RS07915	0.46	-1.7
1,764,996	-		PFLU_RS07915	0.46	-0.9
1,764,996	-		PFLU_RS07915	0.46	+2.9
1,764,996	-		PFLU_RS07915	0.46	-1.2
1,764,996	-		PFLU_RS07915	0.46	+0.3
1,764,996	-		PFLU_RS07915	0.46	+0.5
1,764,996	-		PFLU_RS07915	0.46	-1.4
1,764,996	-		PFLU_RS07915	0.46	-1.1
1,764,996	-		PFLU_RS07915	0.46	+1.1
1,765,098	+		PFLU_RS07915	0.68	+0.2
1,765,098	+		PFLU_RS07915	0.68	+1.5
1,765,099	-		PFLU_RS07915	0.68	+0.6
1,765,099	-		PFLU_RS07915	0.68	-0.4
1,765,182	+		PFLU_RS07915	0.86	+1.4
1,765,182	+		PFLU_RS07915	0.86	+0.6
1,765,183	-		PFLU_RS07915	0.86	-0.0
1,765,183	-		PFLU_RS07915	0.86	-2.9
1,765,266	+				-1.3
1,765,284	+				-1.6
1,765,284	+				+2.2
1,765,285	-				+1.5
1,765,349	+				+0.0
1,765,349	+				-1.0
1,765,350	-		PFLU_RS07920	0.10	+0.4
1,765,350	-		PFLU_RS07920	0.10	+0.5
1,765,350	-		PFLU_RS07920	0.10	+0.5
1,765,370	+		PFLU_RS07920	0.12	+0.2
1,765,371	-		PFLU_RS07920	0.12	-1.7
1,765,378	+		PFLU_RS07920	0.13	+0.2
1,765,379	-		PFLU_RS07920	0.13	-2.4
1,765,379	-		PFLU_RS07920	0.13	-0.6
1,765,456	+		PFLU_RS07920	0.22	-1.0
1,765,456	+		PFLU_RS07920	0.22	-2.6
1,765,457	-		PFLU_RS07920	0.22	-2.3
1,765,457	-		PFLU_RS07920	0.22	+2.0
1,765,506	+		PFLU_RS07920	0.27	+1.9
1,765,507	-		PFLU_RS07920	0.27	-2.0
1,765,507	-		PFLU_RS07920	0.27	+0.8
1,765,537	+		PFLU_RS07920	0.31	+0.6
1,765,537	+		PFLU_RS07920	0.31	+1.5
1,765,537	+		PFLU_RS07920	0.31	+1.9
1,765,538	-		PFLU_RS07920	0.31	-0.9
1,765,588	+		PFLU_RS07920	0.36	-0.6
1,765,588	+		PFLU_RS07920	0.36	-3.7
1,765,589	-		PFLU_RS07920	0.36	-0.6
1,765,589	-		PFLU_RS07920	0.36	-2.5
1,765,653	+		PFLU_RS07920	0.43	-0.8
1,765,653	+		PFLU_RS07920	0.43	+0.9
1,765,654	-		PFLU_RS07920	0.44	-1.0
1,765,654	-		PFLU_RS07920	0.44	+0.7
1,765,654	-		PFLU_RS07920	0.44	+0.5
1,765,695	+		PFLU_RS07920	0.48	-2.3
1,765,695	+		PFLU_RS07920	0.48	-1.0
1,765,696	-		PFLU_RS07920	0.48	-2.1
1,765,696	-		PFLU_RS07920	0.48	+2.8
1,765,696	-		PFLU_RS07920	0.48	-0.4
1,765,696	-		PFLU_RS07920	0.48	+0.5
1,765,696	-		PFLU_RS07920	0.48	-2.3
1,765,727	+		PFLU_RS07920	0.52	+2.1
1,765,727	+		PFLU_RS07920	0.52	-1.7
1,765,727	+		PFLU_RS07920	0.52	+0.5
1,765,727	+		PFLU_RS07920	0.52	-0.6
1,765,727	+		PFLU_RS07920	0.52	-0.7
1,765,727	+		PFLU_RS07920	0.52	-1.4
1,765,727	+		PFLU_RS07920	0.52	-0.8
1,765,728	-		PFLU_RS07920	0.52	-2.3
1,765,728	-		PFLU_RS07920	0.52	+0.4
1,765,728	-		PFLU_RS07920	0.52	+0.7
1,765,731	+		PFLU_RS07920	0.52	+1.2
1,765,731	+		PFLU_RS07920	0.52	-1.0
1,765,731	+		PFLU_RS07920	0.52	+0.4
1,765,731	+		PFLU_RS07920	0.52	+3.2
1,765,731	+		PFLU_RS07920	0.52	-0.4
1,765,731	+		PFLU_RS07920	0.52	+1.2
1,765,731	+		PFLU_RS07920	0.52	+0.6
1,765,732	-		PFLU_RS07920	0.52	-2.1
1,765,732	-		PFLU_RS07920	0.52	-1.9
1,765,732	-		PFLU_RS07920	0.52	-0.2
1,765,736	+		PFLU_RS07920	0.53	-1.4
1,765,736	+		PFLU_RS07920	0.53	+1.4
1,765,736	+		PFLU_RS07920	0.53	+1.3
1,765,737	-		PFLU_RS07920	0.53	+1.9
1,765,737	-		PFLU_RS07920	0.53	-1.0
1,765,779	+		PFLU_RS07920	0.57	-1.7
1,765,839	+		PFLU_RS07920	0.64	+1.3
1,765,839	+		PFLU_RS07920	0.64	+0.6
1,765,839	+		PFLU_RS07920	0.64	+2.3
1,765,839	+		PFLU_RS07920	0.64	-1.6
1,765,839	+		PFLU_RS07920	0.64	-1.4
1,765,839	+		PFLU_RS07920	0.64	-0.6
1,765,839	+		PFLU_RS07920	0.64	+0.0
1,765,839	+		PFLU_RS07920	0.64	+0.5
1,765,839	+		PFLU_RS07920	0.64	-0.9
1,765,839	+		PFLU_RS07920	0.64	-0.3
1,765,839	+		PFLU_RS07920	0.64	+0.2
1,765,839	+		PFLU_RS07920	0.64	+2.9
1,765,839	+		PFLU_RS07920	0.64	-0.7
1,765,839	+		PFLU_RS07920	0.64	-0.8
1,765,839	+		PFLU_RS07920	0.64	+0.1
1,765,839	+		PFLU_RS07920	0.64	+1.7
1,765,839	+		PFLU_RS07920	0.64	-1.0
1,765,839	+		PFLU_RS07920	0.64	-0.4
1,765,840	-		PFLU_RS07920	0.64	+2.2
1,765,840	-		PFLU_RS07920	0.64	-0.4
1,765,840	-		PFLU_RS07920	0.64	-0.4
1,765,840	-		PFLU_RS07920	0.64	+0.3
1,765,840	-		PFLU_RS07920	0.64	+0.3
1,765,840	-		PFLU_RS07920	0.64	-2.5
1,765,840	-		PFLU_RS07920	0.64	-2.8
1,765,840	-		PFLU_RS07920	0.64	+1.4
1,765,840	-		PFLU_RS07920	0.64	+1.3
1,765,840	-		PFLU_RS07920	0.64	-0.9
1,765,840	-		PFLU_RS07920	0.64	+1.5
1,765,840	-		PFLU_RS07920	0.64	-1.9
1,765,840	-		PFLU_RS07920	0.64	-0.7
1,765,840	-		PFLU_RS07920	0.64	-1.7
1,765,840	-		PFLU_RS07920	0.64	-0.1
1,765,840	-		PFLU_RS07920	0.64	+1.3
1,765,840	-		PFLU_RS07920	0.64	+1.5
1,765,866	+		PFLU_RS07920	0.67	+1.3
1,765,866	+		PFLU_RS07920	0.67	+0.4
1,765,867	-		PFLU_RS07920	0.67	+0.5
1,765,867	-		PFLU_RS07920	0.67	+0.6
1,765,900	+		PFLU_RS07920	0.71	-0.8
1,765,900	+		PFLU_RS07920	0.71	+0.9
1,765,901	-		PFLU_RS07920	0.71	+0.6
1,765,901	-		PFLU_RS07920	0.71	-0.8
1,765,901	-		PFLU_RS07920	0.71	+0.2
1,765,901	-		PFLU_RS07920	0.71	+0.4
1,765,901	-		PFLU_RS07920	0.71	+0.2
1,765,901	-		PFLU_RS07920	0.71	-0.6
1,765,923	+		PFLU_RS07920	0.73	-0.6
1,765,923	+		PFLU_RS07920	0.73	+1.0
1,765,923	+		PFLU_RS07920	0.73	+3.2
1,765,923	+		PFLU_RS07920	0.73	+0.2
1,765,923	+		PFLU_RS07920	0.73	+0.7
1,765,924	-		PFLU_RS07920	0.73	+1.9
1,765,924	-		PFLU_RS07920	0.73	-0.1
1,765,924	-		PFLU_RS07920	0.73	-1.3
1,765,924	-		PFLU_RS07920	0.73	-1.6
1,765,924	-		PFLU_RS07920	0.73	-1.7
1,765,924	-		PFLU_RS07920	0.73	-0.4
1,765,924	-		PFLU_RS07920	0.73	-2.4
1,765,924	-		PFLU_RS07920	0.73	-0.2
1,765,924	-		PFLU_RS07920	0.73	-0.6
1,765,924	-		PFLU_RS07920	0.73	-0.5
1,765,924	-		PFLU_RS07920	0.73	+0.3
1,765,953	+		PFLU_RS07920	0.77	-0.4
1,765,953	+		PFLU_RS07920	0.77	-0.3
1,765,973	+		PFLU_RS07920	0.79	+0.8
1,765,973	+		PFLU_RS07920	0.79	-1.5
1,765,973	+		PFLU_RS07920	0.79	+1.3
1,765,973	+		PFLU_RS07920	0.79	+0.2
1,765,973	+		PFLU_RS07920	0.79	-2.1
1,765,973	+		PFLU_RS07920	0.79	+1.0
1,765,974	-		PFLU_RS07920	0.79	-2.7
1,765,974	-		PFLU_RS07920	0.79	-0.7
1,765,974	-		PFLU_RS07920	0.79	-1.8
1,765,974	-		PFLU_RS07920	0.79	-2.3
1,765,974	-		PFLU_RS07920	0.79	+0.6
1,765,974	-		PFLU_RS07920	0.79	-0.2
1,765,974	-		PFLU_RS07920	0.79	-0.2
1,765,974	-		PFLU_RS07920	0.79	+1.1
1,765,989	+		PFLU_RS07920	0.81	+2.0
1,765,989	+		PFLU_RS07920	0.81	+0.8
1,765,990	-		PFLU_RS07920	0.81	-2.1
1,765,990	-		PFLU_RS07920	0.81	+1.3
1,766,025	+		PFLU_RS07920	0.85	-1.9
1,766,041	+		PFLU_RS07920	0.86	-0.5
1,766,041	+		PFLU_RS07920	0.86	-0.0
1,766,041	+		PFLU_RS07920	0.86	-2.3
1,766,042	-		PFLU_RS07920	0.86	-0.4
1,766,139	-				-2.1
1,766,144	+				-1.1
1,766,144	+				+1.2
1,766,144	+				+2.2
1,766,144	+				+0.8
1,766,145	-				+0.8
1,766,145	-				-0.2
1,766,145	-				-1.5
1,766,145	-				-0.9
1,766,145	-				-0.6
1,766,145	-				+2.5
1,766,215	-				-2.6