Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05935

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,325,897	+				-0.2
1,325,897	+				-2.0
1,325,898	-				+1.8
1,325,959	+				+1.3
1,325,967	+				+0.8
1,325,967	+				+0.3
1,325,967	+				-1.9
1,325,967	+				-0.2
1,325,967	+				+3.2
1,325,968	-				-1.8
1,325,968	-				+0.8
1,326,050	+		PFLU_RS05930	0.13	+0.3
1,326,050	+		PFLU_RS05930	0.13	+0.5
1,326,050	+		PFLU_RS05930	0.13	+1.3
1,326,050	+		PFLU_RS05930	0.13	+1.3
1,326,051	-		PFLU_RS05930	0.13	+0.3
1,326,051	-		PFLU_RS05930	0.13	-0.4
1,326,051	-		PFLU_RS05930	0.13	-1.5
1,326,051	-		PFLU_RS05930	0.13	+0.2
1,326,051	-		PFLU_RS05930	0.13	+0.9
1,326,251	+		PFLU_RS05930	0.42	+0.8
1,326,251	+		PFLU_RS05930	0.42	-0.5
1,326,251	+		PFLU_RS05930	0.42	+0.8
1,326,260	+		PFLU_RS05930	0.43	-0.1
1,326,260	+		PFLU_RS05930	0.43	-1.2
1,326,260	+		PFLU_RS05930	0.43	+1.2
1,326,260	+		PFLU_RS05930	0.43	+0.5
1,326,260	+		PFLU_RS05930	0.43	+2.1
1,326,260	+		PFLU_RS05930	0.43	+1.0
1,326,260	+		PFLU_RS05930	0.43	-1.5
1,326,260	+		PFLU_RS05930	0.43	-0.5
1,326,260	+		PFLU_RS05930	0.43	+0.1
1,326,260	+		PFLU_RS05930	0.43	+0.5
1,326,261	-		PFLU_RS05930	0.43	+1.0
1,326,261	-		PFLU_RS05930	0.43	+0.7
1,326,261	-		PFLU_RS05930	0.43	+1.3
1,326,261	-		PFLU_RS05930	0.43	+2.2
1,326,261	-		PFLU_RS05930	0.43	-3.9
1,326,261	-		PFLU_RS05930	0.43	+0.0
1,326,261	-		PFLU_RS05930	0.43	-1.0
1,326,261	-		PFLU_RS05930	0.43	-0.2
1,326,490	+		PFLU_RS05930	0.76	+1.3
1,326,490	+		PFLU_RS05930	0.76	+1.8
1,326,490	+		PFLU_RS05930	0.76	+1.1
1,326,490	+		PFLU_RS05930	0.76	+3.3
1,326,490	+		PFLU_RS05930	0.76	-0.5
1,326,490	+		PFLU_RS05930	0.76	+1.7
1,326,490	+		PFLU_RS05930	0.76	+0.0
1,326,490	+		PFLU_RS05930	0.76	+1.3
1,326,490	+		PFLU_RS05930	0.76	-0.7
1,326,490	+		PFLU_RS05930	0.76	+0.6
1,326,490	+		PFLU_RS05930	0.76	-0.6
1,326,490	+		PFLU_RS05930	0.76	+1.9
1,326,490	+		PFLU_RS05930	0.76	+0.1
1,326,490	+		PFLU_RS05930	0.76	+0.7
1,326,490	+		PFLU_RS05930	0.76	+0.2
1,326,490	+		PFLU_RS05930	0.76	+0.9
1,326,490	+		PFLU_RS05930	0.76	+1.7
1,326,490	+		PFLU_RS05930	0.76	+2.4
1,326,490	+		PFLU_RS05930	0.76	-1.2
1,326,490	+		PFLU_RS05930	0.76	-0.8
1,326,490	+		PFLU_RS05930	0.76	+0.8
1,326,490	+		PFLU_RS05930	0.76	+0.7
1,326,491	-		PFLU_RS05930	0.76	+1.3
1,326,491	-		PFLU_RS05930	0.76	+1.7
1,326,491	-		PFLU_RS05930	0.76	+2.3
1,326,491	-		PFLU_RS05930	0.76	-2.0
1,326,491	-		PFLU_RS05930	0.76	-0.2
1,326,491	-		PFLU_RS05930	0.76	+1.3
1,326,491	-		PFLU_RS05930	0.76	+0.4
1,326,491	-		PFLU_RS05930	0.76	-0.5
1,326,491	-		PFLU_RS05930	0.76	+0.9
1,326,491	-		PFLU_RS05930	0.76	+0.9
1,326,491	-		PFLU_RS05930	0.76	+1.9
1,326,491	-		PFLU_RS05930	0.76	-2.5
1,326,491	-		PFLU_RS05930	0.76	+0.3
1,326,491	-		PFLU_RS05930	0.76	+1.1
1,326,491	-		PFLU_RS05930	0.76	-1.2
1,326,491	-		PFLU_RS05930	0.76	+0.8
1,326,491	-		PFLU_RS05930	0.76	+1.0
1,326,491	-		PFLU_RS05930	0.76	-1.6
1,326,491	-		PFLU_RS05930	0.76	-2.2
1,326,491	-		PFLU_RS05930	0.76	+1.9
1,326,491	-		PFLU_RS05930	0.76	-2.0
1,326,491	-		PFLU_RS05930	0.76	-1.7
1,326,491	-		PFLU_RS05930	0.76	+2.3
1,326,491	-		PFLU_RS05930	0.76	+0.8
1,326,491	-		PFLU_RS05930	0.76	+0.2
1,326,491	-		PFLU_RS05930	0.76	-0.3
1,326,491	-		PFLU_RS05930	0.76	-0.8
1,326,650	+				-1.5
1,326,650	+				+1.8
1,326,650	+				+0.4
1,326,651	-				+0.3
1,326,651	-				-2.4
1,326,651	-				-2.0
1,326,651	-				+1.2
1,326,651	-				+0.3
1,326,662	+				+0.1
1,326,700	-				-1.7
1,326,700	-				-1.2
1,326,729	-		PFLU_RS05935	0.15	-1.1
1,326,729	-		PFLU_RS05935	0.15	-2.7
1,327,005	-		PFLU_RS05935	0.74	+1.0
1,327,005	-		PFLU_RS05935	0.74	+0.9
1,327,005	-		PFLU_RS05935	0.74	-0.5
1,327,088	+				-0.8
1,327,088	+				-0.2
1,327,088	+				-2.1
1,327,088	+				+0.9
1,327,088	+				-1.5
1,327,088	+				-2.5
1,327,088	+				+2.2
1,327,089	-				-1.7
1,327,089	-				-1.8
1,327,089	-				+1.9
1,327,089	-				-0.2
1,327,089	-				-2.8
1,327,089	-				+0.1
1,327,089	-				+1.1
1,327,105	+				-0.2
1,327,105	+				+0.7
1,327,105	+				+0.3
1,327,105	+				+0.1
1,327,105	+				+3.9
1,327,105	+				+1.0
1,327,105	+				+0.6
1,327,106	-				-0.7
1,327,106	-				+0.5
1,327,106	-				-0.8
1,327,106	-				-0.0
1,327,106	-				-1.6
1,327,106	-				-2.2
1,327,180	-				+0.3
1,327,180	-				+0.5
1,327,180	-				+1.1
1,327,192	+				-0.5
1,327,193	-				+1.0
1,327,193	-				-1.9
1,327,216	+				+1.1
1,327,216	+				-0.6
1,327,217	-				-2.4
1,327,408	+		PFLU_RS05940	0.31	+1.0
1,327,408	+		PFLU_RS05940	0.31	-3.1
1,327,408	+		PFLU_RS05940	0.31	-0.1
1,327,408	+		PFLU_RS05940	0.31	+0.3
1,327,408	+		PFLU_RS05940	0.31	-1.8
1,327,408	+		PFLU_RS05940	0.31	+0.8
1,327,409	-		PFLU_RS05940	0.31	-2.9
1,327,409	-		PFLU_RS05940	0.31	+1.8
1,327,409	-		PFLU_RS05940	0.31	+0.4
1,327,409	-		PFLU_RS05940	0.31	-1.9
1,327,409	-		PFLU_RS05940	0.31	+0.4
1,327,409	-		PFLU_RS05940	0.31	+0.4
1,327,474	+		PFLU_RS05940	0.40	+0.2
1,327,474	+		PFLU_RS05940	0.40	-2.2
1,327,474	+		PFLU_RS05940	0.40	+0.6
1,327,474	+		PFLU_RS05940	0.40	+1.7
1,327,474	+		PFLU_RS05940	0.40	-1.6
1,327,474	+		PFLU_RS05940	0.40	-1.3
1,327,474	+		PFLU_RS05940	0.40	-2.2
1,327,475	-		PFLU_RS05940	0.40	-0.8
1,327,475	-		PFLU_RS05940	0.40	+0.8
1,327,475	-		PFLU_RS05940	0.40	-1.2
1,327,475	-		PFLU_RS05940	0.40	+0.9
1,327,540	-		PFLU_RS05940	0.49	+0.3
1,327,682	+		PFLU_RS05940	0.69	-1.1
1,327,682	+		PFLU_RS05940	0.69	+0.3
1,327,682	+		PFLU_RS05940	0.69	-2.0
1,327,683	-		PFLU_RS05940	0.69	-0.1
1,327,683	-		PFLU_RS05940	0.69	+0.8
1,327,683	-		PFLU_RS05940	0.69	+2.0
1,327,683	-		PFLU_RS05940	0.69	+0.9
1,327,683	-		PFLU_RS05940	0.69	+1.2
1,327,869	-				+0.8
1,327,888	-				+0.1
1,327,888	-				+0.6
1,327,888	-				+0.2
1,327,930	+				-0.4
1,327,935	+				-2.6
1,327,935	+				-1.0
1,327,935	+				+0.0
1,327,935	+				+2.6
1,327,935	+				-0.2
1,327,935	+				-2.8
1,327,936	-				+1.1
1,327,936	-				+0.0
1,327,936	-				-0.2
1,327,936	-				-2.8
1,327,936	-				+0.8
1,327,936	-				+0.2
1,327,936	-				-1.2
1,328,039	+				-0.7
1,328,039	+				-0.3
1,328,040	-				+1.2
1,328,113	+		PFLU_RS05945	0.23	-2.6
1,328,113	+		PFLU_RS05945	0.23	+0.7
1,328,113	+		PFLU_RS05945	0.23	-0.6
1,328,113	+		PFLU_RS05945	0.23	-0.7
1,328,114	-		PFLU_RS05945	0.24	-2.8
1,328,114	-		PFLU_RS05945	0.24	-2.0
1,328,114	-		PFLU_RS05945	0.24	-2.1
1,328,114	-		PFLU_RS05945	0.24	+0.0