Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03995

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03990 and PFLU_RS03995 are separated by 129 nucleotidesPFLU_RS03995 and PFLU_RS04000 overlap by 51 nucleotidesPFLU_RS04000 and PFLU_RS04005 are separated by 2 nucleotides PFLU_RS03990: PFLU_RS03990 - methyl-accepting chemotaxis protein, at 900,473 to 902,503 _RS03990 PFLU_RS03995: PFLU_RS03995 - hypothetical protein, at 902,633 to 903,061 _RS03995 PFLU_RS04000: PFLU_RS04000 - TatD family hydrolase, at 903,011 to 903,787 _RS04000 PFLU_RS04005: PFLU_RS04005 - catabolite repressor/activator, at 903,790 to 904,785 _RS04005 Position (kb) 902 903 904Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 901.994 kb on - strand, within PFLU_RS03990at 901.994 kb on - strand, within PFLU_RS03990at 901.994 kb on - strand, within PFLU_RS03990at 901.998 kb on + strand, within PFLU_RS03990at 901.998 kb on + strand, within PFLU_RS03990at 902.202 kb on + strand, within PFLU_RS03990at 902.202 kb on + strand, within PFLU_RS03990at 902.281 kb on + strand, within PFLU_RS03990at 902.281 kb on + strand, within PFLU_RS03990at 902.282 kb on - strand, within PFLU_RS03990at 902.405 kb on + strandat 902.406 kb on - strandat 902.502 kb on - strandat 902.521 kb on + strandat 902.521 kb on + strandat 902.521 kb on + strandat 902.521 kb on + strandat 902.522 kb on - strandat 902.522 kb on - strandat 902.522 kb on - strandat 902.522 kb on - strandat 902.536 kb on + strandat 902.536 kb on + strandat 902.536 kb on + strandat 902.536 kb on + strandat 902.536 kb on + strandat 902.536 kb on + strandat 902.536 kb on + strandat 902.537 kb on - strandat 902.537 kb on - strandat 902.537 kb on - strandat 902.744 kb on + strand, within PFLU_RS03995at 902.745 kb on - strand, within PFLU_RS03995at 902.957 kb on + strand, within PFLU_RS03995at 903.013 kb on - strandat 903.060 kb on - strandat 903.220 kb on + strand, within PFLU_RS04000at 903.220 kb on + strand, within PFLU_RS04000at 903.220 kb on + strand, within PFLU_RS04000at 903.220 kb on + strand, within PFLU_RS04000at 903.220 kb on + strand, within PFLU_RS04000at 903.221 kb on - strand, within PFLU_RS04000at 903.221 kb on - strand, within PFLU_RS04000at 903.221 kb on - strand, within PFLU_RS04000at 903.221 kb on - strand, within PFLU_RS04000at 903.282 kb on + strand, within PFLU_RS04000at 903.282 kb on + strand, within PFLU_RS04000at 903.283 kb on - strand, within PFLU_RS04000at 903.386 kb on + strand, within PFLU_RS04000at 903.386 kb on + strand, within PFLU_RS04000at 903.386 kb on + strand, within PFLU_RS04000at 903.386 kb on + strand, within PFLU_RS04000at 903.386 kb on + strand, within PFLU_RS04000at 903.386 kb on + strand, within PFLU_RS04000at 903.386 kb on + strand, within PFLU_RS04000at 903.386 kb on + strand, within PFLU_RS04000at 903.386 kb on + strand, within PFLU_RS04000at 903.387 kb on - strand, within PFLU_RS04000at 903.387 kb on - strand, within PFLU_RS04000at 903.387 kb on - strand, within PFLU_RS04000at 903.387 kb on - strand, within PFLU_RS04000at 903.387 kb on - strand, within PFLU_RS04000at 903.387 kb on - strand, within PFLU_RS04000at 903.387 kb on - strand, within PFLU_RS04000at 903.387 kb on - strand, within PFLU_RS04000at 903.387 kb on - strand, within PFLU_RS04000at 903.483 kb on + strand, within PFLU_RS04000at 903.483 kb on + strand, within PFLU_RS04000at 903.483 kb on + strand, within PFLU_RS04000at 903.483 kb on + strand, within PFLU_RS04000at 903.483 kb on + strand, within PFLU_RS04000at 903.484 kb on - strand, within PFLU_RS04000at 903.484 kb on - strand, within PFLU_RS04000at 903.484 kb on - strand, within PFLU_RS04000at 903.484 kb on - strand, within PFLU_RS04000at 903.588 kb on + strand, within PFLU_RS04000at 903.589 kb on - strand, within PFLU_RS04000at 903.589 kb on - strand, within PFLU_RS04000at 903.600 kb on - strand, within PFLU_RS04000at 903.617 kb on + strand, within PFLU_RS04000at 903.617 kb on + strand, within PFLU_RS04000at 903.669 kb on + strand, within PFLU_RS04000at 903.669 kb on + strand, within PFLU_RS04000at 903.669 kb on + strand, within PFLU_RS04000at 903.669 kb on + strand, within PFLU_RS04000at 903.669 kb on + strand, within PFLU_RS04000at 903.670 kb on - strand, within PFLU_RS04000at 903.670 kb on - strand, within PFLU_RS04000at 903.804 kb on + strandat 903.804 kb on + strandat 903.804 kb on + strandat 903.805 kb on - strandat 903.805 kb on - strandat 903.805 kb on - strandat 903.835 kb on + strandat 903.835 kb on + strandat 903.836 kb on - strandat 903.836 kb on - strandat 903.836 kb on - strandat 903.848 kb on + strandat 903.960 kb on + strand, within PFLU_RS04005at 903.961 kb on - strand, within PFLU_RS04005at 903.961 kb on - strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.043 kb on + strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005at 904.044 kb on - strand, within PFLU_RS04005

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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901,994 - PFLU_RS03990 0.75 -0.8
901,994 - PFLU_RS03990 0.75 -0.4
901,994 - PFLU_RS03990 0.75 +1.3
901,998 + PFLU_RS03990 0.75 -1.0
901,998 + PFLU_RS03990 0.75 +0.5
902,202 + PFLU_RS03990 0.85 +1.2
902,202 + PFLU_RS03990 0.85 -1.3
902,281 + PFLU_RS03990 0.89 +1.6
902,281 + PFLU_RS03990 0.89 +0.6
902,282 - PFLU_RS03990 0.89 -2.3
902,405 + +1.2
902,406 - +1.0
902,502 - +1.1
902,521 + -1.6
902,521 + -0.5
902,521 + -1.0
902,521 + -0.6
902,522 - -0.0
902,522 - -2.2
902,522 - -2.4
902,522 - +1.3
902,536 + -1.7
902,536 + +1.5
902,536 + +0.6
902,536 + +0.2
902,536 + -2.5
902,536 + +1.2
902,536 + +1.0
902,537 - -1.9
902,537 - -0.1
902,537 - -1.4
902,744 + PFLU_RS03995 0.26 +2.2
902,745 - PFLU_RS03995 0.26 -2.3
902,957 + PFLU_RS03995 0.76 -0.9
903,013 - -0.5
903,060 - +1.1
903,220 + PFLU_RS04000 0.27 -1.7
903,220 + PFLU_RS04000 0.27 +1.2
903,220 + PFLU_RS04000 0.27 -1.1
903,220 + PFLU_RS04000 0.27 +1.2
903,220 + PFLU_RS04000 0.27 -1.2
903,221 - PFLU_RS04000 0.27 +1.2
903,221 - PFLU_RS04000 0.27 +1.2
903,221 - PFLU_RS04000 0.27 +0.3
903,221 - PFLU_RS04000 0.27 -0.2
903,282 + PFLU_RS04000 0.35 +0.2
903,282 + PFLU_RS04000 0.35 +0.3
903,283 - PFLU_RS04000 0.35 +1.2
903,386 + PFLU_RS04000 0.48 +1.4
903,386 + PFLU_RS04000 0.48 -0.2
903,386 + PFLU_RS04000 0.48 -1.3
903,386 + PFLU_RS04000 0.48 -3.0
903,386 + PFLU_RS04000 0.48 -0.8
903,386 + PFLU_RS04000 0.48 -2.0
903,386 + PFLU_RS04000 0.48 -1.1
903,386 + PFLU_RS04000 0.48 +0.9
903,386 + PFLU_RS04000 0.48 +0.0
903,387 - PFLU_RS04000 0.48 -1.7
903,387 - PFLU_RS04000 0.48 +0.7
903,387 - PFLU_RS04000 0.48 +1.0
903,387 - PFLU_RS04000 0.48 -3.0
903,387 - PFLU_RS04000 0.48 +0.1
903,387 - PFLU_RS04000 0.48 -0.2
903,387 - PFLU_RS04000 0.48 -0.0
903,387 - PFLU_RS04000 0.48 -2.9
903,387 - PFLU_RS04000 0.48 +0.6
903,483 + PFLU_RS04000 0.61 -0.1
903,483 + PFLU_RS04000 0.61 +1.2
903,483 + PFLU_RS04000 0.61 -1.1
903,483 + PFLU_RS04000 0.61 -0.4
903,483 + PFLU_RS04000 0.61 +0.2
903,484 - PFLU_RS04000 0.61 +1.0
903,484 - PFLU_RS04000 0.61 +0.2
903,484 - PFLU_RS04000 0.61 +2.3
903,484 - PFLU_RS04000 0.61 +0.2
903,588 + PFLU_RS04000 0.74 -1.3
903,589 - PFLU_RS04000 0.74 -0.9
903,589 - PFLU_RS04000 0.74 +0.8
903,600 - PFLU_RS04000 0.76 +0.8
903,617 + PFLU_RS04000 0.78 +0.6
903,617 + PFLU_RS04000 0.78 +1.2
903,669 + PFLU_RS04000 0.85 -1.4
903,669 + PFLU_RS04000 0.85 +0.8
903,669 + PFLU_RS04000 0.85 +0.2
903,669 + PFLU_RS04000 0.85 +1.9
903,669 + PFLU_RS04000 0.85 +1.1
903,670 - PFLU_RS04000 0.85 -2.1
903,670 - PFLU_RS04000 0.85 +0.6
903,804 + +1.4
903,804 + -1.1
903,804 + -0.5
903,805 - -0.6
903,805 - +0.3
903,805 - +1.3
903,835 + +1.0
903,835 + -2.3
903,836 - +0.2
903,836 - +0.1
903,836 - +0.4
903,848 + -0.6
903,960 + PFLU_RS04005 0.17 -2.8
903,961 - PFLU_RS04005 0.17 -1.0
903,961 - PFLU_RS04005 0.17 -1.8
904,043 + PFLU_RS04005 0.25 -0.8
904,043 + PFLU_RS04005 0.25 -0.3
904,043 + PFLU_RS04005 0.25 -1.8
904,043 + PFLU_RS04005 0.25 +0.0
904,043 + PFLU_RS04005 0.25 +1.5
904,043 + PFLU_RS04005 0.25 -3.5
904,043 + PFLU_RS04005 0.25 +3.1
904,043 + PFLU_RS04005 0.25 +1.3
904,043 + PFLU_RS04005 0.25 -1.8
904,043 + PFLU_RS04005 0.25 -2.8
904,043 + PFLU_RS04005 0.25 -2.1
904,043 + PFLU_RS04005 0.25 +1.0
904,043 + PFLU_RS04005 0.25 +1.4
904,043 + PFLU_RS04005 0.25 -2.1
904,043 + PFLU_RS04005 0.25 +0.9
904,043 + PFLU_RS04005 0.25 +0.2
904,043 + PFLU_RS04005 0.25 +0.6
904,043 + PFLU_RS04005 0.25 -0.4
904,043 + PFLU_RS04005 0.25 +0.1
904,043 + PFLU_RS04005 0.25 +1.0
904,044 - PFLU_RS04005 0.26 +0.7
904,044 - PFLU_RS04005 0.26 +1.9
904,044 - PFLU_RS04005 0.26 +0.9
904,044 - PFLU_RS04005 0.26 +0.8
904,044 - PFLU_RS04005 0.26 +0.1
904,044 - PFLU_RS04005 0.26 +0.3
904,044 - PFLU_RS04005 0.26 -2.1
904,044 - PFLU_RS04005 0.26 -1.7
904,044 - PFLU_RS04005 0.26 -1.4
904,044 - PFLU_RS04005 0.26 -0.3
904,044 - PFLU_RS04005 0.26 +2.4
904,044 - PFLU_RS04005 0.26 -0.0
904,044 - PFLU_RS04005 0.26 +1.7
904,044 - PFLU_RS04005 0.26 -0.9
904,044 - PFLU_RS04005 0.26 +1.1
904,044 - PFLU_RS04005 0.26 -1.4
904,044 - PFLU_RS04005 0.26 +0.2
904,044 - PFLU_RS04005 0.26 +2.0
904,044 - PFLU_RS04005 0.26 +0.2
904,044 - PFLU_RS04005 0.26 +1.8
904,044 - PFLU_RS04005 0.26 +0.4
904,044 - PFLU_RS04005 0.26 -0.4

Or see this region's nucleotide sequence