Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02240 and PFLU_RS02245 are separated by 15 nucleotides PFLU_RS02245 and PFLU_RS02250 overlap by 15 nucleotides PFLU_RS02250 and PFLU_RS02255 are separated by 173 nucleotides
PFLU_RS02240: PFLU_RS02240 - type VI secretion system tip protein VgrG, at 506,681 to 508,705
_RS02240
PFLU_RS02245: PFLU_RS02245 - DUF4123 domain-containing protein, at 508,721 to 509,404
_RS02245
PFLU_RS02250: PFLU_RS02250 - O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase, at 509,390 to 510,667
_RS02250
PFLU_RS02255: PFLU_RS02255 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 510,841 to 511,677
_RS02255
Position (kb) 509
510
511 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 508.466 kb on - strand, within PFLU_RS02240 at 508.567 kb on - strand at 508.621 kb on + strand at 508.703 kb on + strand at 508.703 kb on + strand at 508.703 kb on + strand at 508.703 kb on + strand at 508.704 kb on - strand at 508.704 kb on - strand at 508.704 kb on - strand at 508.714 kb on + strand at 508.714 kb on + strand at 508.714 kb on + strand at 508.714 kb on + strand at 508.714 kb on + strand at 508.714 kb on + strand at 508.714 kb on + strand at 508.715 kb on - strand at 508.715 kb on - strand at 508.715 kb on - strand at 508.715 kb on - strand at 508.715 kb on - strand at 508.853 kb on + strand, within PFLU_RS02245 at 508.854 kb on - strand, within PFLU_RS02245 at 508.854 kb on - strand, within PFLU_RS02245 at 508.854 kb on - strand, within PFLU_RS02245 at 508.880 kb on + strand, within PFLU_RS02245 at 508.880 kb on + strand, within PFLU_RS02245 at 508.880 kb on + strand, within PFLU_RS02245 at 508.880 kb on + strand, within PFLU_RS02245 at 508.881 kb on - strand, within PFLU_RS02245 at 508.881 kb on - strand, within PFLU_RS02245 at 508.881 kb on - strand, within PFLU_RS02245 at 508.881 kb on - strand, within PFLU_RS02245 at 508.881 kb on - strand, within PFLU_RS02245 at 508.938 kb on + strand, within PFLU_RS02245 at 509.103 kb on + strand, within PFLU_RS02245 at 509.103 kb on + strand, within PFLU_RS02245 at 509.103 kb on + strand, within PFLU_RS02245 at 509.103 kb on + strand, within PFLU_RS02245 at 509.104 kb on - strand, within PFLU_RS02245 at 509.104 kb on - strand, within PFLU_RS02245 at 509.294 kb on + strand, within PFLU_RS02245 at 509.294 kb on + strand, within PFLU_RS02245 at 509.294 kb on + strand, within PFLU_RS02245 at 509.294 kb on + strand, within PFLU_RS02245 at 509.295 kb on - strand, within PFLU_RS02245 at 509.336 kb on + strand at 509.336 kb on + strand at 509.364 kb on - strand at 509.382 kb on - strand at 509.382 kb on - strand at 509.432 kb on + strand at 509.432 kb on + strand at 509.433 kb on - strand at 509.433 kb on - strand at 509.605 kb on - strand, within PFLU_RS02250 at 509.605 kb on - strand, within PFLU_RS02250 at 509.612 kb on + strand, within PFLU_RS02250 at 509.612 kb on + strand, within PFLU_RS02250 at 509.612 kb on + strand, within PFLU_RS02250 at 509.613 kb on - strand, within PFLU_RS02250 at 509.613 kb on - strand, within PFLU_RS02250 at 509.613 kb on - strand, within PFLU_RS02250 at 509.676 kb on + strand, within PFLU_RS02250 at 509.676 kb on + strand, within PFLU_RS02250 at 509.677 kb on - strand, within PFLU_RS02250 at 509.721 kb on + strand, within PFLU_RS02250 at 509.928 kb on + strand, within PFLU_RS02250 at 509.928 kb on + strand, within PFLU_RS02250 at 509.928 kb on + strand, within PFLU_RS02250 at 509.929 kb on - strand, within PFLU_RS02250 at 509.929 kb on - strand, within PFLU_RS02250 at 509.944 kb on - strand, within PFLU_RS02250 at 510.054 kb on + strand, within PFLU_RS02250 at 510.054 kb on + strand, within PFLU_RS02250 at 510.054 kb on + strand, within PFLU_RS02250 at 510.054 kb on + strand, within PFLU_RS02250 at 510.054 kb on + strand, within PFLU_RS02250 at 510.054 kb on + strand, within PFLU_RS02250 at 510.055 kb on - strand, within PFLU_RS02250 at 510.055 kb on - strand, within PFLU_RS02250 at 510.055 kb on - strand, within PFLU_RS02250 at 510.055 kb on - strand, within PFLU_RS02250 at 510.055 kb on - strand, within PFLU_RS02250 at 510.193 kb on + strand, within PFLU_RS02250 at 510.193 kb on + strand, within PFLU_RS02250 at 510.193 kb on + strand, within PFLU_RS02250 at 510.225 kb on + strand, within PFLU_RS02250 at 510.225 kb on + strand, within PFLU_RS02250 at 510.225 kb on + strand, within PFLU_RS02250 at 510.225 kb on + strand, within PFLU_RS02250 at 510.225 kb on + strand, within PFLU_RS02250 at 510.226 kb on - strand, within PFLU_RS02250 at 510.238 kb on + strand, within PFLU_RS02250 at 510.238 kb on + strand, within PFLU_RS02250 at 510.239 kb on - strand, within PFLU_RS02250 at 510.239 kb on - strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.336 kb on + strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.337 kb on - strand, within PFLU_RS02250 at 510.349 kb on - strand, within PFLU_RS02250 at 510.405 kb on + strand, within PFLU_RS02250 at 510.513 kb on + strand, within PFLU_RS02250 at 510.513 kb on + strand, within PFLU_RS02250 at 510.513 kb on + strand, within PFLU_RS02250 at 510.513 kb on + strand, within PFLU_RS02250 at 510.513 kb on + strand, within PFLU_RS02250 at 510.513 kb on + strand, within PFLU_RS02250 at 510.513 kb on + strand, within PFLU_RS02250 at 510.513 kb on + strand, within PFLU_RS02250 at 510.514 kb on - strand, within PFLU_RS02250 at 510.514 kb on - strand, within PFLU_RS02250 at 510.514 kb on - strand, within PFLU_RS02250 at 510.591 kb on + strand at 510.592 kb on - strand at 510.673 kb on + strand at 510.705 kb on + strand at 510.705 kb on + strand at 510.705 kb on + strand at 510.705 kb on + strand at 510.705 kb on + strand at 510.706 kb on - strand at 510.706 kb on - strand at 510.765 kb on + strand at 510.765 kb on + strand at 510.765 kb on + strand at 510.765 kb on + strand at 510.765 kb on + strand at 510.765 kb on + strand at 510.765 kb on + strand at 510.766 kb on - strand at 510.766 kb on - strand at 510.766 kb on - strand at 510.766 kb on - strand at 510.766 kb on - strand at 510.766 kb on - strand at 510.766 kb on - strand at 510.766 kb on - strand at 510.766 kb on - strand at 510.805 kb on + strand at 510.805 kb on + strand at 510.806 kb on - strand at 510.806 kb on - strand at 510.980 kb on - strand, within PFLU_RS02255 at 511.019 kb on - strand, within PFLU_RS02255 at 511.019 kb on - strand, within PFLU_RS02255 at 511.078 kb on + strand, within PFLU_RS02255 at 511.078 kb on + strand, within PFLU_RS02255 at 511.078 kb on + strand, within PFLU_RS02255 at 511.078 kb on + strand, within PFLU_RS02255 at 511.078 kb on + strand, within PFLU_RS02255 at 511.079 kb on - strand, within PFLU_RS02255 at 511.079 kb on - strand, within PFLU_RS02255 at 511.079 kb on - strand, within PFLU_RS02255 at 511.079 kb on - strand, within PFLU_RS02255 at 511.079 kb on - strand, within PFLU_RS02255 at 511.079 kb on - strand, within PFLU_RS02255 at 511.123 kb on + strand, within PFLU_RS02255 at 511.124 kb on - strand, within PFLU_RS02255 at 511.126 kb on + strand, within PFLU_RS02255 at 511.127 kb on - strand, within PFLU_RS02255 at 511.127 kb on - strand, within PFLU_RS02255 at 511.460 kb on - strand, within PFLU_RS02255
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 508,466 - PFLU_RS02240 0.88 -0.2 508,567 - +2.2 508,621 + -2.8 508,703 + -0.2 508,703 + -0.3 508,703 + -1.6 508,703 + -0.2 508,704 - +0.1 508,704 - -0.8 508,704 - -1.7 508,714 + -0.1 508,714 + +0.0 508,714 + -1.4 508,714 + +1.0 508,714 + -0.6 508,714 + +1.7 508,714 + +0.2 508,715 - -2.2 508,715 - +1.3 508,715 - +1.4 508,715 - -1.8 508,715 - -0.5 508,853 + PFLU_RS02245 0.19 +1.0 508,854 - PFLU_RS02245 0.19 +0.4 508,854 - PFLU_RS02245 0.19 -0.5 508,854 - PFLU_RS02245 0.19 -2.1 508,880 + PFLU_RS02245 0.23 +0.7 508,880 + PFLU_RS02245 0.23 +2.4 508,880 + PFLU_RS02245 0.23 -0.0 508,880 + PFLU_RS02245 0.23 +0.5 508,881 - PFLU_RS02245 0.23 +1.4 508,881 - PFLU_RS02245 0.23 +2.2 508,881 - PFLU_RS02245 0.23 +1.1 508,881 - PFLU_RS02245 0.23 -1.5 508,881 - PFLU_RS02245 0.23 -1.0 508,938 + PFLU_RS02245 0.32 -0.0 509,103 + PFLU_RS02245 0.56 +0.9 509,103 + PFLU_RS02245 0.56 +0.9 509,103 + PFLU_RS02245 0.56 +1.1 509,103 + PFLU_RS02245 0.56 -1.2 509,104 - PFLU_RS02245 0.56 -3.4 509,104 - PFLU_RS02245 0.56 +0.6 509,294 + PFLU_RS02245 0.84 +1.0 509,294 + PFLU_RS02245 0.84 -0.9 509,294 + PFLU_RS02245 0.84 -0.9 509,294 + PFLU_RS02245 0.84 -0.2 509,295 - PFLU_RS02245 0.84 -0.9 509,336 + -0.4 509,336 + +2.9 509,364 - -0.5 509,382 - +1.7 509,382 - -1.4 509,432 + +0.2 509,432 + -0.0 509,433 - +0.7 509,433 - +1.2 509,605 - PFLU_RS02250 0.17 -1.2 509,605 - PFLU_RS02250 0.17 -1.5 509,612 + PFLU_RS02250 0.17 -0.9 509,612 + PFLU_RS02250 0.17 +1.9 509,612 + PFLU_RS02250 0.17 -1.1 509,613 - PFLU_RS02250 0.17 +0.4 509,613 - PFLU_RS02250 0.17 -1.6 509,613 - PFLU_RS02250 0.17 +1.5 509,676 + PFLU_RS02250 0.22 +1.3 509,676 + PFLU_RS02250 0.22 -2.0 509,677 - PFLU_RS02250 0.22 +0.5 509,721 + PFLU_RS02250 0.26 +0.3 509,928 + PFLU_RS02250 0.42 +1.7 509,928 + PFLU_RS02250 0.42 -0.6 509,928 + PFLU_RS02250 0.42 -0.3 509,929 - PFLU_RS02250 0.42 -0.7 509,929 - PFLU_RS02250 0.42 -2.2 509,944 - PFLU_RS02250 0.43 -2.4 510,054 + PFLU_RS02250 0.52 +2.2 510,054 + PFLU_RS02250 0.52 +1.9 510,054 + PFLU_RS02250 0.52 -1.2 510,054 + PFLU_RS02250 0.52 -0.8 510,054 + PFLU_RS02250 0.52 +0.2 510,054 + PFLU_RS02250 0.52 +0.7 510,055 - PFLU_RS02250 0.52 -1.5 510,055 - PFLU_RS02250 0.52 +0.4 510,055 - PFLU_RS02250 0.52 -0.6 510,055 - PFLU_RS02250 0.52 -1.2 510,055 - PFLU_RS02250 0.52 -0.9 510,193 + PFLU_RS02250 0.63 +1.8 510,193 + PFLU_RS02250 0.63 +1.8 510,193 + PFLU_RS02250 0.63 +0.2 510,225 + PFLU_RS02250 0.65 -0.2 510,225 + PFLU_RS02250 0.65 +1.9 510,225 + PFLU_RS02250 0.65 +1.6 510,225 + PFLU_RS02250 0.65 +1.7 510,225 + PFLU_RS02250 0.65 +0.1 510,226 - PFLU_RS02250 0.65 -0.9 510,238 + PFLU_RS02250 0.66 -1.6 510,238 + PFLU_RS02250 0.66 +4.1 510,239 - PFLU_RS02250 0.66 -0.1 510,239 - PFLU_RS02250 0.66 +0.5 510,336 + PFLU_RS02250 0.74 -0.7 510,336 + PFLU_RS02250 0.74 +1.5 510,336 + PFLU_RS02250 0.74 -2.7 510,336 + PFLU_RS02250 0.74 -2.5 510,336 + PFLU_RS02250 0.74 +0.1 510,336 + PFLU_RS02250 0.74 +0.1 510,336 + PFLU_RS02250 0.74 +1.4 510,336 + PFLU_RS02250 0.74 -0.2 510,336 + PFLU_RS02250 0.74 -0.3 510,336 + PFLU_RS02250 0.74 -0.4 510,336 + PFLU_RS02250 0.74 +0.4 510,336 + PFLU_RS02250 0.74 -0.5 510,336 + PFLU_RS02250 0.74 +0.6 510,336 + PFLU_RS02250 0.74 +1.3 510,336 + PFLU_RS02250 0.74 +2.7 510,336 + PFLU_RS02250 0.74 +0.4 510,336 + PFLU_RS02250 0.74 +2.0 510,336 + PFLU_RS02250 0.74 +0.0 510,336 + PFLU_RS02250 0.74 -2.2 510,336 + PFLU_RS02250 0.74 +2.0 510,336 + PFLU_RS02250 0.74 +1.3 510,336 + PFLU_RS02250 0.74 -0.7 510,336 + PFLU_RS02250 0.74 +1.0 510,336 + PFLU_RS02250 0.74 -1.6 510,337 - PFLU_RS02250 0.74 -0.1 510,337 - PFLU_RS02250 0.74 -0.9 510,337 - PFLU_RS02250 0.74 +1.5 510,337 - PFLU_RS02250 0.74 +2.4 510,337 - PFLU_RS02250 0.74 +0.7 510,337 - PFLU_RS02250 0.74 -0.7 510,337 - PFLU_RS02250 0.74 -0.3 510,337 - PFLU_RS02250 0.74 -1.8 510,337 - PFLU_RS02250 0.74 +2.6 510,337 - PFLU_RS02250 0.74 +0.7 510,337 - PFLU_RS02250 0.74 +1.1 510,337 - PFLU_RS02250 0.74 -1.8 510,337 - PFLU_RS02250 0.74 -0.9 510,337 - PFLU_RS02250 0.74 +1.0 510,349 - PFLU_RS02250 0.75 -1.9 510,405 + PFLU_RS02250 0.79 -0.0 510,513 + PFLU_RS02250 0.88 +0.1 510,513 + PFLU_RS02250 0.88 +1.8 510,513 + PFLU_RS02250 0.88 +1.3 510,513 + PFLU_RS02250 0.88 -1.4 510,513 + PFLU_RS02250 0.88 +2.7 510,513 + PFLU_RS02250 0.88 -0.0 510,513 + PFLU_RS02250 0.88 +3.8 510,513 + PFLU_RS02250 0.88 +0.6 510,514 - PFLU_RS02250 0.88 -1.0 510,514 - PFLU_RS02250 0.88 -0.3 510,514 - PFLU_RS02250 0.88 +1.0 510,591 + +4.4 510,592 - +1.1 510,673 + +0.7 510,705 + +1.4 510,705 + -0.3 510,705 + +0.6 510,705 + +1.2 510,705 + -0.1 510,706 - -0.9 510,706 - -0.2 510,765 + +0.7 510,765 + +0.8 510,765 + -0.6 510,765 + -2.2 510,765 + -1.9 510,765 + +0.2 510,765 + +1.1 510,766 - -2.7 510,766 - -1.3 510,766 - +0.2 510,766 - +0.9 510,766 - -0.1 510,766 - +0.2 510,766 - -0.5 510,766 - +1.6 510,766 - +0.3 510,805 + -1.0 510,805 + +0.4 510,806 - +1.3 510,806 - +0.8 510,980 - PFLU_RS02255 0.17 +0.1 511,019 - PFLU_RS02255 0.21 -1.2 511,019 - PFLU_RS02255 0.21 +0.2 511,078 + PFLU_RS02255 0.28 -0.2 511,078 + PFLU_RS02255 0.28 -2.7 511,078 + PFLU_RS02255 0.28 +0.5 511,078 + PFLU_RS02255 0.28 -2.5 511,078 + PFLU_RS02255 0.28 +0.6 511,079 - PFLU_RS02255 0.28 -2.0 511,079 - PFLU_RS02255 0.28 +5.0 511,079 - PFLU_RS02255 0.28 +0.3 511,079 - PFLU_RS02255 0.28 +0.9 511,079 - PFLU_RS02255 0.28 -2.3 511,079 - PFLU_RS02255 0.28 -0.0 511,123 + PFLU_RS02255 0.34 -0.3 511,124 - PFLU_RS02255 0.34 +0.6 511,126 + PFLU_RS02255 0.34 -1.1 511,127 - PFLU_RS02255 0.34 +1.1 511,127 - PFLU_RS02255 0.34 -0.0 511,460 - PFLU_RS02255 0.74 -0.5
Or see this region's nucleotide sequence