Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01560

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01555 and PFLU_RS01560 are separated by 173 nucleotidesPFLU_RS01560 and PFLU_RS01565 are separated by 87 nucleotides PFLU_RS01555: PFLU_RS01555 - alpha/beta fold hydrolase, at 349,699 to 350,652 _RS01555 PFLU_RS01560: PFLU_RS01560 - arsenic resistance protein, at 350,826 to 351,791 _RS01560 PFLU_RS01565: PFLU_RS01565 - membrane protein, at 351,879 to 353,471 _RS01565 Position (kb) 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 349.919 kb on + strand, within PFLU_RS01555at 349.920 kb on - strand, within PFLU_RS01555at 349.920 kb on - strand, within PFLU_RS01555at 349.920 kb on - strand, within PFLU_RS01555at 349.984 kb on + strand, within PFLU_RS01555at 349.985 kb on - strand, within PFLU_RS01555at 349.985 kb on - strand, within PFLU_RS01555at 349.985 kb on - strand, within PFLU_RS01555at 349.996 kb on + strand, within PFLU_RS01555at 349.996 kb on + strand, within PFLU_RS01555at 349.997 kb on - strand, within PFLU_RS01555at 350.204 kb on + strand, within PFLU_RS01555at 350.204 kb on + strand, within PFLU_RS01555at 350.205 kb on - strand, within PFLU_RS01555at 350.205 kb on - strand, within PFLU_RS01555at 350.447 kb on + strand, within PFLU_RS01555at 350.447 kb on + strand, within PFLU_RS01555at 350.448 kb on - strand, within PFLU_RS01555at 350.448 kb on - strand, within PFLU_RS01555at 350.448 kb on - strand, within PFLU_RS01555at 350.448 kb on - strand, within PFLU_RS01555at 350.448 kb on - strand, within PFLU_RS01555at 350.448 kb on - strand, within PFLU_RS01555at 350.448 kb on - strand, within PFLU_RS01555at 350.448 kb on - strand, within PFLU_RS01555at 350.448 kb on - strand, within PFLU_RS01555at 350.448 kb on - strand, within PFLU_RS01555at 350.480 kb on + strand, within PFLU_RS01555at 350.480 kb on + strand, within PFLU_RS01555at 350.480 kb on + strand, within PFLU_RS01555at 350.481 kb on - strand, within PFLU_RS01555at 350.481 kb on - strand, within PFLU_RS01555at 350.481 kb on - strand, within PFLU_RS01555at 350.498 kb on + strand, within PFLU_RS01555at 350.669 kb on + strandat 350.669 kb on + strandat 350.669 kb on + strandat 350.670 kb on - strandat 350.706 kb on + strandat 350.706 kb on + strandat 350.707 kb on - strandat 350.708 kb on + strandat 350.708 kb on + strandat 350.709 kb on - strandat 350.709 kb on - strandat 350.723 kb on - strandat 350.782 kb on + strandat 350.782 kb on + strandat 350.782 kb on + strandat 350.782 kb on + strandat 350.782 kb on + strandat 350.782 kb on + strandat 350.782 kb on + strandat 350.783 kb on - strandat 350.783 kb on - strandat 350.783 kb on - strandat 350.783 kb on - strandat 350.783 kb on - strandat 350.783 kb on - strandat 350.788 kb on + strandat 350.788 kb on + strandat 350.788 kb on + strandat 350.789 kb on - strandat 350.789 kb on - strandat 350.865 kb on + strandat 350.865 kb on + strandat 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.967 kb on + strand, within PFLU_RS01560at 350.968 kb on - strand, within PFLU_RS01560at 350.968 kb on - strand, within PFLU_RS01560at 350.968 kb on - strand, within PFLU_RS01560at 350.968 kb on - strand, within PFLU_RS01560at 350.968 kb on - strand, within PFLU_RS01560at 350.968 kb on - strand, within PFLU_RS01560at 350.968 kb on - strand, within PFLU_RS01560at 350.968 kb on - strand, within PFLU_RS01560at 350.968 kb on - strand, within PFLU_RS01560at 350.968 kb on - strand, within PFLU_RS01560at 351.056 kb on + strand, within PFLU_RS01560at 351.159 kb on + strand, within PFLU_RS01560at 351.159 kb on + strand, within PFLU_RS01560at 351.159 kb on + strand, within PFLU_RS01560at 351.159 kb on + strand, within PFLU_RS01560at 351.160 kb on - strand, within PFLU_RS01560at 351.160 kb on - strand, within PFLU_RS01560at 351.160 kb on - strand, within PFLU_RS01560at 351.174 kb on - strand, within PFLU_RS01560at 351.258 kb on + strand, within PFLU_RS01560at 351.258 kb on + strand, within PFLU_RS01560at 351.258 kb on + strand, within PFLU_RS01560at 351.259 kb on - strand, within PFLU_RS01560at 351.259 kb on - strand, within PFLU_RS01560at 351.259 kb on - strand, within PFLU_RS01560at 351.528 kb on + strand, within PFLU_RS01560at 351.528 kb on + strand, within PFLU_RS01560at 351.528 kb on + strand, within PFLU_RS01560at 351.528 kb on + strand, within PFLU_RS01560at 351.529 kb on - strand, within PFLU_RS01560at 351.529 kb on - strand, within PFLU_RS01560at 351.529 kb on - strand, within PFLU_RS01560at 351.529 kb on - strand, within PFLU_RS01560at 351.529 kb on - strand, within PFLU_RS01560at 351.529 kb on - strand, within PFLU_RS01560at 351.529 kb on - strand, within PFLU_RS01560at 351.529 kb on - strand, within PFLU_RS01560at 351.635 kb on + strand, within PFLU_RS01560at 351.635 kb on + strand, within PFLU_RS01560at 351.635 kb on + strand, within PFLU_RS01560at 351.635 kb on + strand, within PFLU_RS01560at 351.635 kb on + strand, within PFLU_RS01560at 351.636 kb on - strand, within PFLU_RS01560at 351.636 kb on - strand, within PFLU_RS01560at 351.636 kb on - strand, within PFLU_RS01560at 351.636 kb on - strand, within PFLU_RS01560at 351.636 kb on - strand, within PFLU_RS01560at 351.636 kb on - strand, within PFLU_RS01560at 351.636 kb on - strand, within PFLU_RS01560at 351.649 kb on + strand, within PFLU_RS01560at 351.650 kb on - strand, within PFLU_RS01560at 351.650 kb on - strand, within PFLU_RS01560at 351.747 kb on + strandat 351.747 kb on + strandat 351.747 kb on + strandat 351.748 kb on - strandat 351.748 kb on - strandat 351.748 kb on - strandat 351.748 kb on - strandat 351.823 kb on - strandat 351.823 kb on - strandat 351.846 kb on + strandat 351.846 kb on + strandat 351.846 kb on + strandat 351.846 kb on + strandat 351.846 kb on + strandat 351.846 kb on + strandat 351.846 kb on + strandat 351.846 kb on + strandat 351.846 kb on + strandat 351.847 kb on - strandat 351.847 kb on - strandat 351.847 kb on - strandat 351.847 kb on - strandat 351.847 kb on - strandat 351.847 kb on - strandat 351.847 kb on - strandat 351.847 kb on - strandat 351.847 kb on - strandat 351.847 kb on - strandat 351.861 kb on + strandat 351.934 kb on + strandat 351.935 kb on - strandat 352.047 kb on + strand, within PFLU_RS01565at 352.047 kb on + strand, within PFLU_RS01565at 352.047 kb on + strand, within PFLU_RS01565at 352.048 kb on - strand, within PFLU_RS01565at 352.060 kb on - strand, within PFLU_RS01565at 352.185 kb on + strand, within PFLU_RS01565at 352.323 kb on + strand, within PFLU_RS01565at 352.323 kb on + strand, within PFLU_RS01565at 352.323 kb on + strand, within PFLU_RS01565at 352.323 kb on + strand, within PFLU_RS01565at 352.324 kb on - strand, within PFLU_RS01565at 352.324 kb on - strand, within PFLU_RS01565at 352.393 kb on + strand, within PFLU_RS01565at 352.440 kb on + strand, within PFLU_RS01565at 352.632 kb on + strand, within PFLU_RS01565at 352.632 kb on + strand, within PFLU_RS01565at 352.633 kb on - strand, within PFLU_RS01565at 352.633 kb on - strand, within PFLU_RS01565at 352.633 kb on - strand, within PFLU_RS01565at 352.633 kb on - strand, within PFLU_RS01565at 352.633 kb on - strand, within PFLU_RS01565at 352.633 kb on - strand, within PFLU_RS01565at 352.638 kb on + strand, within PFLU_RS01565at 352.639 kb on - strand, within PFLU_RS01565at 352.639 kb on - strand, within PFLU_RS01565at 352.639 kb on - strand, within PFLU_RS01565at 352.656 kb on + strand, within PFLU_RS01565at 352.656 kb on + strand, within PFLU_RS01565at 352.657 kb on - strand, within PFLU_RS01565at 352.662 kb on + strand, within PFLU_RS01565

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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349,919 + PFLU_RS01555 0.23 +0.1
349,920 - PFLU_RS01555 0.23 +0.9
349,920 - PFLU_RS01555 0.23 -1.1
349,920 - PFLU_RS01555 0.23 +2.4
349,984 + PFLU_RS01555 0.30 -2.6
349,985 - PFLU_RS01555 0.30 -0.1
349,985 - PFLU_RS01555 0.30 -1.2
349,985 - PFLU_RS01555 0.30 +3.4
349,996 + PFLU_RS01555 0.31 +1.3
349,996 + PFLU_RS01555 0.31 +3.3
349,997 - PFLU_RS01555 0.31 +0.7
350,204 + PFLU_RS01555 0.53 -0.1
350,204 + PFLU_RS01555 0.53 -2.1
350,205 - PFLU_RS01555 0.53 -1.1
350,205 - PFLU_RS01555 0.53 +0.9
350,447 + PFLU_RS01555 0.78 -2.9
350,447 + PFLU_RS01555 0.78 -0.2
350,448 - PFLU_RS01555 0.79 +1.2
350,448 - PFLU_RS01555 0.79 +0.1
350,448 - PFLU_RS01555 0.79 -0.1
350,448 - PFLU_RS01555 0.79 +0.1
350,448 - PFLU_RS01555 0.79 +2.1
350,448 - PFLU_RS01555 0.79 -0.2
350,448 - PFLU_RS01555 0.79 +0.1
350,448 - PFLU_RS01555 0.79 -0.2
350,448 - PFLU_RS01555 0.79 -2.1
350,448 - PFLU_RS01555 0.79 +1.1
350,480 + PFLU_RS01555 0.82 +0.1
350,480 + PFLU_RS01555 0.82 -0.4
350,480 + PFLU_RS01555 0.82 +1.7
350,481 - PFLU_RS01555 0.82 -1.4
350,481 - PFLU_RS01555 0.82 +0.6
350,481 - PFLU_RS01555 0.82 -1.4
350,498 + PFLU_RS01555 0.84 +0.6
350,669 + -1.6
350,669 + +1.0
350,669 + +1.6
350,670 - -0.1
350,706 + -0.1
350,706 + +2.2
350,707 - -0.1
350,708 + +1.5
350,708 + -1.2
350,709 - -1.5
350,709 - +1.5
350,723 - +0.5
350,782 + -0.1
350,782 + +1.7
350,782 + -0.1
350,782 + -1.3
350,782 + -1.1
350,782 + +1.1
350,782 + -3.7
350,783 - -1.3
350,783 - -1.1
350,783 - -1.6
350,783 - -1.1
350,783 - +0.8
350,783 - -0.3
350,788 + +1.6
350,788 + +0.9
350,788 + -0.6
350,789 - +0.9
350,789 - -0.7
350,865 + +1.6
350,865 + -0.6
350,967 + PFLU_RS01560 0.15 +0.9
350,967 + PFLU_RS01560 0.15 +0.1
350,967 + PFLU_RS01560 0.15 +0.1
350,967 + PFLU_RS01560 0.15 -1.6
350,967 + PFLU_RS01560 0.15 -1.5
350,967 + PFLU_RS01560 0.15 +1.4
350,967 + PFLU_RS01560 0.15 +0.1
350,967 + PFLU_RS01560 0.15 +1.3
350,967 + PFLU_RS01560 0.15 +1.8
350,967 + PFLU_RS01560 0.15 +0.2
350,967 + PFLU_RS01560 0.15 +0.8
350,967 + PFLU_RS01560 0.15 -2.2
350,967 + PFLU_RS01560 0.15 +1.0
350,967 + PFLU_RS01560 0.15 +0.6
350,967 + PFLU_RS01560 0.15 +1.2
350,967 + PFLU_RS01560 0.15 +0.1
350,967 + PFLU_RS01560 0.15 -0.4
350,967 + PFLU_RS01560 0.15 -0.6
350,968 - PFLU_RS01560 0.15 -1.2
350,968 - PFLU_RS01560 0.15 -2.4
350,968 - PFLU_RS01560 0.15 +2.6
350,968 - PFLU_RS01560 0.15 -1.8
350,968 - PFLU_RS01560 0.15 +1.5
350,968 - PFLU_RS01560 0.15 -0.5
350,968 - PFLU_RS01560 0.15 -1.0
350,968 - PFLU_RS01560 0.15 +0.9
350,968 - PFLU_RS01560 0.15 +0.3
350,968 - PFLU_RS01560 0.15 -2.4
351,056 + PFLU_RS01560 0.24 -0.9
351,159 + PFLU_RS01560 0.34 -2.4
351,159 + PFLU_RS01560 0.34 +0.8
351,159 + PFLU_RS01560 0.34 +0.1
351,159 + PFLU_RS01560 0.34 +1.7
351,160 - PFLU_RS01560 0.35 +1.1
351,160 - PFLU_RS01560 0.35 +0.3
351,160 - PFLU_RS01560 0.35 -0.5
351,174 - PFLU_RS01560 0.36 +0.7
351,258 + PFLU_RS01560 0.45 -0.8
351,258 + PFLU_RS01560 0.45 -0.3
351,258 + PFLU_RS01560 0.45 +0.1
351,259 - PFLU_RS01560 0.45 +1.7
351,259 - PFLU_RS01560 0.45 +0.2
351,259 - PFLU_RS01560 0.45 +0.5
351,528 + PFLU_RS01560 0.73 +3.1
351,528 + PFLU_RS01560 0.73 +0.5
351,528 + PFLU_RS01560 0.73 +0.2
351,528 + PFLU_RS01560 0.73 -2.1
351,529 - PFLU_RS01560 0.73 +0.9
351,529 - PFLU_RS01560 0.73 +0.4
351,529 - PFLU_RS01560 0.73 -0.7
351,529 - PFLU_RS01560 0.73 +1.2
351,529 - PFLU_RS01560 0.73 -1.3
351,529 - PFLU_RS01560 0.73 +0.2
351,529 - PFLU_RS01560 0.73 -2.9
351,529 - PFLU_RS01560 0.73 +0.2
351,635 + PFLU_RS01560 0.84 -2.1
351,635 + PFLU_RS01560 0.84 -0.4
351,635 + PFLU_RS01560 0.84 +1.3
351,635 + PFLU_RS01560 0.84 +1.2
351,635 + PFLU_RS01560 0.84 -3.0
351,636 - PFLU_RS01560 0.84 -0.5
351,636 - PFLU_RS01560 0.84 -1.3
351,636 - PFLU_RS01560 0.84 -0.9
351,636 - PFLU_RS01560 0.84 -1.3
351,636 - PFLU_RS01560 0.84 +0.1
351,636 - PFLU_RS01560 0.84 +0.3
351,636 - PFLU_RS01560 0.84 -1.5
351,649 + PFLU_RS01560 0.85 -1.7
351,650 - PFLU_RS01560 0.85 +0.1
351,650 - PFLU_RS01560 0.85 +0.3
351,747 + +0.3
351,747 + -0.4
351,747 + -1.0
351,748 - -2.1
351,748 - -1.2
351,748 - +0.6
351,748 - +0.5
351,823 - -0.4
351,823 - -0.6
351,846 + -2.8
351,846 + +1.8
351,846 + +2.4
351,846 + +0.5
351,846 + +1.6
351,846 + -1.2
351,846 + -1.1
351,846 + -1.0
351,846 + -0.3
351,847 - -0.7
351,847 - +1.2
351,847 - -0.8
351,847 - -2.2
351,847 - +0.5
351,847 - -2.0
351,847 - -1.1
351,847 - +0.9
351,847 - -0.3
351,847 - -1.5
351,861 + +2.7
351,934 + -3.0
351,935 - +0.7
352,047 + PFLU_RS01565 0.11 -2.7
352,047 + PFLU_RS01565 0.11 +0.1
352,047 + PFLU_RS01565 0.11 +1.8
352,048 - PFLU_RS01565 0.11 -0.5
352,060 - PFLU_RS01565 0.11 -2.2
352,185 + PFLU_RS01565 0.19 +1.2
352,323 + PFLU_RS01565 0.28 +2.1
352,323 + PFLU_RS01565 0.28 -1.3
352,323 + PFLU_RS01565 0.28 +1.7
352,323 + PFLU_RS01565 0.28 -1.9
352,324 - PFLU_RS01565 0.28 +0.7
352,324 - PFLU_RS01565 0.28 +0.4
352,393 + PFLU_RS01565 0.32 -1.2
352,440 + PFLU_RS01565 0.35 -0.3
352,632 + PFLU_RS01565 0.47 +0.2
352,632 + PFLU_RS01565 0.47 +0.6
352,633 - PFLU_RS01565 0.47 +2.7
352,633 - PFLU_RS01565 0.47 -2.0
352,633 - PFLU_RS01565 0.47 +1.5
352,633 - PFLU_RS01565 0.47 -1.4
352,633 - PFLU_RS01565 0.47 -0.4
352,633 - PFLU_RS01565 0.47 -1.5
352,638 + PFLU_RS01565 0.48 +0.7
352,639 - PFLU_RS01565 0.48 -1.7
352,639 - PFLU_RS01565 0.48 -0.5
352,639 - PFLU_RS01565 0.48 +0.5
352,656 + PFLU_RS01565 0.49 +2.1
352,656 + PFLU_RS01565 0.49 -1.2
352,657 - PFLU_RS01565 0.49 -0.3
352,662 + PFLU_RS01565 0.49 -0.1

Or see this region's nucleotide sequence