Strain Fitness in Pseudomonas sp. S08-1 around OH686_03910

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03900 and OH686_03905 overlap by 4 nucleotidesOH686_03905 and OH686_03910 overlap by 4 nucleotidesOH686_03910 and OH686_03915 are separated by 106 nucleotidesOH686_03915 and OH686_03920 are separated by 40 nucleotides OH686_03900: OH686_03900 - Electron transport complex protein RnfG, at 806,605 to 807,204 _03900 OH686_03905: OH686_03905 - hypothetical protein, at 807,201 to 807,755 _03905 OH686_03910: OH686_03910 - endonuclease III, at 807,752 to 808,390 _03910 OH686_03915: OH686_03915 - Leucyl-tRNA synthetase, at 808,497 to 808,673 _03915 OH686_03920: OH686_03920 - Sensory box histidine kinase, at 808,714 to 809,787 _03920 Position (kb) 807 808 809Strain fitness (log2 ratio) -3 -2 -1 0 1at 806.755 kb on + strand, within OH686_03900at 806.755 kb on + strand, within OH686_03900at 806.755 kb on + strand, within OH686_03900at 806.807 kb on + strand, within OH686_03900at 806.807 kb on + strand, within OH686_03900at 806.807 kb on + strand, within OH686_03900at 806.808 kb on - strand, within OH686_03900at 806.834 kb on - strand, within OH686_03900at 806.834 kb on - strand, within OH686_03900at 806.893 kb on + strand, within OH686_03900at 807.466 kb on + strand, within OH686_03905at 807.467 kb on - strand, within OH686_03905at 807.562 kb on + strand, within OH686_03905at 807.563 kb on - strand, within OH686_03905at 807.563 kb on - strand, within OH686_03905at 807.563 kb on - strand, within OH686_03905at 807.695 kb on + strand, within OH686_03905at 807.696 kb on - strand, within OH686_03905at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.827 kb on + strand, within OH686_03910at 807.828 kb on - strand, within OH686_03910at 807.828 kb on - strand, within OH686_03910at 807.828 kb on - strand, within OH686_03910at 807.828 kb on - strand, within OH686_03910at 807.828 kb on - strand, within OH686_03910at 807.829 kb on + strand, within OH686_03910at 807.829 kb on + strand, within OH686_03910at 807.829 kb on + strand, within OH686_03910at 807.829 kb on + strand, within OH686_03910at 807.830 kb on - strand, within OH686_03910at 807.830 kb on - strand, within OH686_03910at 807.830 kb on - strand, within OH686_03910at 807.830 kb on - strand, within OH686_03910at 807.830 kb on - strand, within OH686_03910at 807.915 kb on - strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.944 kb on + strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.945 kb on - strand, within OH686_03910at 807.974 kb on + strand, within OH686_03910at 807.974 kb on + strand, within OH686_03910at 807.975 kb on - strand, within OH686_03910at 807.975 kb on - strand, within OH686_03910at 807.995 kb on + strand, within OH686_03910at 807.995 kb on + strand, within OH686_03910at 807.995 kb on + strand, within OH686_03910at 807.995 kb on + strand, within OH686_03910at 807.995 kb on + strand, within OH686_03910at 807.996 kb on - strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.171 kb on + strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.172 kb on - strand, within OH686_03910at 808.304 kb on + strand, within OH686_03910at 808.305 kb on - strand, within OH686_03910at 808.364 kb on + strandat 808.365 kb on - strandat 808.410 kb on + strandat 808.411 kb on - strandat 808.411 kb on - strandat 808.411 kb on - strandat 808.411 kb on - strandat 808.413 kb on + strandat 808.414 kb on - strandat 808.456 kb on + strandat 808.456 kb on + strandat 808.456 kb on + strandat 808.456 kb on + strandat 808.457 kb on - strandat 808.457 kb on - strandat 808.457 kb on - strandat 808.457 kb on - strandat 808.458 kb on + strandat 808.458 kb on + strandat 808.459 kb on - strandat 808.459 kb on - strandat 808.459 kb on - strandat 808.459 kb on - strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.494 kb on + strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.495 kb on - strandat 808.656 kb on + strandat 808.663 kb on - strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.761 kb on - strandat 808.922 kb on + strand, within OH686_03920at 808.922 kb on + strand, within OH686_03920at 808.922 kb on + strand, within OH686_03920at 808.922 kb on + strand, within OH686_03920at 808.922 kb on + strand, within OH686_03920at 808.923 kb on - strand, within OH686_03920at 808.923 kb on - strand, within OH686_03920at 808.923 kb on - strand, within OH686_03920at 809.069 kb on + strand, within OH686_03920at 809.084 kb on + strand, within OH686_03920at 809.084 kb on + strand, within OH686_03920at 809.084 kb on + strand, within OH686_03920at 809.084 kb on + strand, within OH686_03920at 809.084 kb on + strand, within OH686_03920at 809.084 kb on + strand, within OH686_03920at 809.085 kb on - strand, within OH686_03920at 809.085 kb on - strand, within OH686_03920at 809.085 kb on - strand, within OH686_03920at 809.085 kb on - strand, within OH686_03920at 809.085 kb on - strand, within OH686_03920at 809.309 kb on + strand, within OH686_03920at 809.309 kb on + strand, within OH686_03920at 809.310 kb on - strand, within OH686_03920at 809.379 kb on + strand, within OH686_03920at 809.379 kb on + strand, within OH686_03920at 809.380 kb on - strand, within OH686_03920at 809.388 kb on + strand, within OH686_03920

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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806,755 + OH686_03900 0.25 +0.9
806,755 + OH686_03900 0.25 +0.3
806,755 + OH686_03900 0.25 -1.4
806,807 + OH686_03900 0.34 +0.8
806,807 + OH686_03900 0.34 +0.2
806,807 + OH686_03900 0.34 -0.0
806,808 - OH686_03900 0.34 -0.0
806,834 - OH686_03900 0.38 -0.1
806,834 - OH686_03900 0.38 +0.1
806,893 + OH686_03900 0.48 +0.7
807,466 + OH686_03905 0.48 +0.0
807,467 - OH686_03905 0.48 -1.1
807,562 + OH686_03905 0.65 -0.7
807,563 - OH686_03905 0.65 +0.3
807,563 - OH686_03905 0.65 -0.5
807,563 - OH686_03905 0.65 -0.3
807,695 + OH686_03905 0.89 -0.4
807,696 - OH686_03905 0.89 +0.9
807,827 + OH686_03910 0.12 -3.3
807,827 + OH686_03910 0.12 +0.9
807,827 + OH686_03910 0.12 -0.3
807,827 + OH686_03910 0.12 -0.1
807,827 + OH686_03910 0.12 -0.7
807,827 + OH686_03910 0.12 -0.2
807,827 + OH686_03910 0.12 +0.1
807,828 - OH686_03910 0.12 -1.1
807,828 - OH686_03910 0.12 +0.7
807,828 - OH686_03910 0.12 -0.1
807,828 - OH686_03910 0.12 -0.0
807,828 - OH686_03910 0.12 +1.3
807,829 + OH686_03910 0.12 +0.4
807,829 + OH686_03910 0.12 -0.5
807,829 + OH686_03910 0.12 -0.1
807,829 + OH686_03910 0.12 +0.4
807,830 - OH686_03910 0.12 +1.2
807,830 - OH686_03910 0.12 -0.3
807,830 - OH686_03910 0.12 -0.6
807,830 - OH686_03910 0.12 -0.6
807,830 - OH686_03910 0.12 -0.1
807,915 - OH686_03910 0.26 +1.3
807,944 + OH686_03910 0.30 -0.4
807,944 + OH686_03910 0.30 +0.1
807,944 + OH686_03910 0.30 -0.8
807,944 + OH686_03910 0.30 -0.2
807,944 + OH686_03910 0.30 -0.1
807,944 + OH686_03910 0.30 -1.4
807,944 + OH686_03910 0.30 +0.5
807,944 + OH686_03910 0.30 -0.1
807,944 + OH686_03910 0.30 -0.0
807,944 + OH686_03910 0.30 -0.3
807,944 + OH686_03910 0.30 -1.3
807,945 - OH686_03910 0.30 -0.9
807,945 - OH686_03910 0.30 -2.0
807,945 - OH686_03910 0.30 -0.9
807,945 - OH686_03910 0.30 +0.9
807,945 - OH686_03910 0.30 -0.6
807,945 - OH686_03910 0.30 -2.7
807,945 - OH686_03910 0.30 -0.2
807,945 - OH686_03910 0.30 +0.2
807,945 - OH686_03910 0.30 -0.5
807,945 - OH686_03910 0.30 -1.2
807,945 - OH686_03910 0.30 +0.2
807,945 - OH686_03910 0.30 +1.2
807,945 - OH686_03910 0.30 +0.6
807,974 + OH686_03910 0.35 -0.8
807,974 + OH686_03910 0.35 -0.0
807,975 - OH686_03910 0.35 -0.4
807,975 - OH686_03910 0.35 -0.1
807,995 + OH686_03910 0.38 +0.6
807,995 + OH686_03910 0.38 -0.3
807,995 + OH686_03910 0.38 +0.5
807,995 + OH686_03910 0.38 +1.0
807,995 + OH686_03910 0.38 +0.6
807,996 - OH686_03910 0.38 -0.0
808,171 + OH686_03910 0.66 -0.0
808,171 + OH686_03910 0.66 -0.5
808,171 + OH686_03910 0.66 -2.8
808,171 + OH686_03910 0.66 -0.4
808,171 + OH686_03910 0.66 -1.9
808,171 + OH686_03910 0.66 +0.1
808,171 + OH686_03910 0.66 +1.2
808,171 + OH686_03910 0.66 -1.0
808,171 + OH686_03910 0.66 -0.3
808,172 - OH686_03910 0.66 +0.7
808,172 - OH686_03910 0.66 +0.4
808,172 - OH686_03910 0.66 +0.5
808,172 - OH686_03910 0.66 +0.2
808,172 - OH686_03910 0.66 -0.5
808,172 - OH686_03910 0.66 -0.2
808,172 - OH686_03910 0.66 +0.9
808,172 - OH686_03910 0.66 +0.1
808,172 - OH686_03910 0.66 -0.3
808,304 + OH686_03910 0.86 -0.8
808,305 - OH686_03910 0.87 -0.2
808,364 + +1.6
808,365 - +0.5
808,410 + -0.5
808,411 - +0.3
808,411 - +0.3
808,411 - +0.3
808,411 - +0.6
808,413 + -0.5
808,414 - +0.4
808,456 + -0.3
808,456 + +0.5
808,456 + +0.7
808,456 + -0.5
808,457 - +0.6
808,457 - -2.1
808,457 - -0.4
808,457 - -0.2
808,458 + +0.4
808,458 + +0.2
808,459 - +1.2
808,459 - +0.7
808,459 - +0.2
808,459 - -1.1
808,494 + +1.4
808,494 + +0.7
808,494 + -0.9
808,494 + -0.1
808,494 + +0.2
808,494 + -0.5
808,494 + -0.4
808,495 - +0.8
808,495 - -0.8
808,495 - +0.4
808,495 - +0.3
808,495 - +1.1
808,495 - +0.3
808,495 - +0.9
808,495 - -0.3
808,495 - +0.9
808,495 - +0.9
808,495 - -1.3
808,495 - -1.2
808,495 - -0.1
808,656 + -1.3
808,663 - -0.9
808,760 + -0.3
808,760 + +0.5
808,760 + +0.3
808,760 + -0.3
808,760 + -1.1
808,760 + -0.9
808,760 + -2.4
808,760 + +0.5
808,760 + +0.5
808,760 + +0.2
808,760 + +0.0
808,760 + +1.2
808,760 + +0.4
808,760 + -0.8
808,761 - -1.1
808,761 - -0.9
808,761 - -0.1
808,761 - +0.5
808,761 - -0.4
808,761 - -0.7
808,761 - -0.1
808,761 - +0.0
808,761 - +0.8
808,761 - -0.2
808,761 - +0.8
808,761 - -0.4
808,761 - +0.2
808,761 - -0.1
808,761 - -0.9
808,761 - +0.3
808,761 - +0.4
808,922 + OH686_03920 0.19 -0.3
808,922 + OH686_03920 0.19 +0.9
808,922 + OH686_03920 0.19 +0.7
808,922 + OH686_03920 0.19 +0.5
808,922 + OH686_03920 0.19 -0.4
808,923 - OH686_03920 0.19 -0.0
808,923 - OH686_03920 0.19 -0.8
808,923 - OH686_03920 0.19 +0.9
809,069 + OH686_03920 0.33 +0.1
809,084 + OH686_03920 0.34 +0.7
809,084 + OH686_03920 0.34 +0.6
809,084 + OH686_03920 0.34 -0.2
809,084 + OH686_03920 0.34 +0.2
809,084 + OH686_03920 0.34 +0.1
809,084 + OH686_03920 0.34 +0.1
809,085 - OH686_03920 0.35 +0.2
809,085 - OH686_03920 0.35 +0.1
809,085 - OH686_03920 0.35 -0.0
809,085 - OH686_03920 0.35 -0.3
809,085 - OH686_03920 0.35 -0.7
809,309 + OH686_03920 0.55 -0.4
809,309 + OH686_03920 0.55 +1.1
809,310 - OH686_03920 0.55 +1.3
809,379 + OH686_03920 0.62 +0.3
809,379 + OH686_03920 0.62 -0.5
809,380 - OH686_03920 0.62 +0.3
809,388 + OH686_03920 0.63 -0.0

Or see this region's nucleotide sequence