Strain Fitness in Pseudomonas sp. S08-1 around OH686_03095

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03090 and OH686_03095 are separated by 58 nucleotidesOH686_03095 and OH686_03100 are separated by 40 nucleotidesOH686_03100 and OH686_03105 overlap by 93 nucleotides OH686_03090: OH686_03090 - Chemotactic transducer-related protein, at 645,906 to 648,860 _03090 OH686_03095: OH686_03095 - uncharacterized protein YggL, at 648,919 to 649,260 _03095 OH686_03100: OH686_03100 - hypothetical protein' product='hypothetical protein, at 649,301 to 649,648 _03100 OH686_03105: OH686_03105 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 649,556 to 650,890 _03105 Position (kb) 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1at 647.949 kb on + strand, within OH686_03090at 647.949 kb on + strand, within OH686_03090at 647.949 kb on + strand, within OH686_03090at 647.949 kb on + strand, within OH686_03090at 647.949 kb on + strand, within OH686_03090at 647.949 kb on + strand, within OH686_03090at 647.949 kb on + strand, within OH686_03090at 647.949 kb on + strand, within OH686_03090at 647.949 kb on + strand, within OH686_03090at 647.950 kb on - strand, within OH686_03090at 647.950 kb on - strand, within OH686_03090at 647.950 kb on - strand, within OH686_03090at 647.950 kb on - strand, within OH686_03090at 647.950 kb on - strand, within OH686_03090at 647.950 kb on - strand, within OH686_03090at 647.950 kb on - strand, within OH686_03090at 647.950 kb on - strand, within OH686_03090at 647.950 kb on - strand, within OH686_03090at 648.013 kb on - strand, within OH686_03090at 648.375 kb on + strand, within OH686_03090at 648.376 kb on - strand, within OH686_03090at 648.376 kb on - strand, within OH686_03090at 648.376 kb on - strand, within OH686_03090at 648.376 kb on - strand, within OH686_03090at 648.399 kb on + strand, within OH686_03090at 648.399 kb on + strand, within OH686_03090at 648.399 kb on + strand, within OH686_03090at 648.399 kb on + strand, within OH686_03090at 648.399 kb on + strand, within OH686_03090at 648.399 kb on + strand, within OH686_03090at 648.399 kb on + strand, within OH686_03090at 648.399 kb on + strand, within OH686_03090at 648.400 kb on - strand, within OH686_03090at 648.400 kb on - strand, within OH686_03090at 648.400 kb on - strand, within OH686_03090at 648.400 kb on - strand, within OH686_03090at 648.400 kb on - strand, within OH686_03090at 648.400 kb on - strand, within OH686_03090at 648.400 kb on - strand, within OH686_03090at 648.400 kb on - strand, within OH686_03090at 648.406 kb on + strand, within OH686_03090at 648.406 kb on + strand, within OH686_03090at 648.406 kb on + strand, within OH686_03090at 648.407 kb on - strand, within OH686_03090at 648.407 kb on - strand, within OH686_03090at 648.407 kb on - strand, within OH686_03090at 648.407 kb on - strand, within OH686_03090at 648.407 kb on - strand, within OH686_03090at 648.444 kb on + strand, within OH686_03090at 648.580 kb on + strandat 648.663 kb on + strandat 648.663 kb on + strandat 648.664 kb on - strandat 648.664 kb on - strandat 648.664 kb on - strandat 648.780 kb on + strandat 648.781 kb on - strandat 648.792 kb on + strandat 648.792 kb on + strandat 648.793 kb on - strandat 648.793 kb on - strandat 649.073 kb on + strand, within OH686_03095at 649.073 kb on + strand, within OH686_03095at 649.074 kb on - strand, within OH686_03095at 649.074 kb on - strand, within OH686_03095at 649.074 kb on - strand, within OH686_03095at 649.074 kb on - strand, within OH686_03095at 649.091 kb on + strand, within OH686_03095at 649.091 kb on + strand, within OH686_03095at 649.091 kb on + strand, within OH686_03095at 649.091 kb on + strand, within OH686_03095at 649.092 kb on - strand, within OH686_03095at 649.092 kb on - strand, within OH686_03095at 649.092 kb on - strand, within OH686_03095at 649.092 kb on - strand, within OH686_03095at 649.092 kb on - strand, within OH686_03095at 649.260 kb on + strandat 649.261 kb on - strandat 649.261 kb on - strandat 649.261 kb on - strandat 649.261 kb on - strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.274 kb on + strandat 649.274 kb on + strandat 649.274 kb on + strandat 649.274 kb on + strandat 649.274 kb on + strandat 649.275 kb on - strandat 649.275 kb on - strandat 649.275 kb on - strandat 649.302 kb on + strandat 649.302 kb on + strandat 649.303 kb on - strandat 649.340 kb on + strand, within OH686_03100at 649.340 kb on + strand, within OH686_03100at 649.340 kb on + strand, within OH686_03100at 649.340 kb on + strand, within OH686_03100at 649.340 kb on + strand, within OH686_03100at 649.341 kb on - strand, within OH686_03100at 649.341 kb on - strand, within OH686_03100at 649.341 kb on - strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.393 kb on - strand, within OH686_03100at 649.393 kb on - strand, within OH686_03100at 649.608 kb on + strandat 649.700 kb on + strand, within OH686_03105at 649.700 kb on + strand, within OH686_03105at 649.701 kb on - strand, within OH686_03105at 649.701 kb on - strand, within OH686_03105at 649.701 kb on - strand, within OH686_03105at 649.701 kb on - strand, within OH686_03105at 649.751 kb on + strand, within OH686_03105at 649.752 kb on - strand, within OH686_03105at 649.752 kb on - strand, within OH686_03105at 649.752 kb on - strand, within OH686_03105at 649.752 kb on - strand, within OH686_03105at 649.796 kb on + strand, within OH686_03105at 649.796 kb on + strand, within OH686_03105at 649.796 kb on + strand, within OH686_03105at 649.796 kb on + strand, within OH686_03105at 649.796 kb on + strand, within OH686_03105at 649.797 kb on - strand, within OH686_03105at 649.797 kb on - strand, within OH686_03105at 649.797 kb on - strand, within OH686_03105at 649.933 kb on - strand, within OH686_03105at 649.933 kb on - strand, within OH686_03105at 650.007 kb on + strand, within OH686_03105at 650.007 kb on + strand, within OH686_03105at 650.007 kb on + strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.147 kb on + strand, within OH686_03105at 650.147 kb on + strand, within OH686_03105at 650.147 kb on + strand, within OH686_03105at 650.147 kb on + strand, within OH686_03105at 650.147 kb on + strand, within OH686_03105at 650.148 kb on - strand, within OH686_03105at 650.225 kb on + strand, within OH686_03105at 650.225 kb on + strand, within OH686_03105at 650.225 kb on + strand, within OH686_03105at 650.226 kb on - strand, within OH686_03105at 650.226 kb on - strand, within OH686_03105at 650.226 kb on - strand, within OH686_03105at 650.226 kb on - strand, within OH686_03105at 650.226 kb on - strand, within OH686_03105at 650.252 kb on + strand, within OH686_03105at 650.252 kb on + strand, within OH686_03105at 650.252 kb on + strand, within OH686_03105at 650.253 kb on - strand, within OH686_03105

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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647,949 + OH686_03090 0.69 +0.9
647,949 + OH686_03090 0.69 +0.2
647,949 + OH686_03090 0.69 -0.0
647,949 + OH686_03090 0.69 -0.3
647,949 + OH686_03090 0.69 -0.9
647,949 + OH686_03090 0.69 +0.0
647,949 + OH686_03090 0.69 +1.3
647,949 + OH686_03090 0.69 +0.1
647,949 + OH686_03090 0.69 +0.0
647,950 - OH686_03090 0.69 +0.6
647,950 - OH686_03090 0.69 +1.2
647,950 - OH686_03090 0.69 -0.4
647,950 - OH686_03090 0.69 +0.4
647,950 - OH686_03090 0.69 -0.4
647,950 - OH686_03090 0.69 +0.4
647,950 - OH686_03090 0.69 -0.3
647,950 - OH686_03090 0.69 -0.2
647,950 - OH686_03090 0.69 -0.1
648,013 - OH686_03090 0.71 -0.5
648,375 + OH686_03090 0.84 +0.8
648,376 - OH686_03090 0.84 +0.2
648,376 - OH686_03090 0.84 +0.6
648,376 - OH686_03090 0.84 -1.4
648,376 - OH686_03090 0.84 +0.1
648,399 + OH686_03090 0.84 -0.4
648,399 + OH686_03090 0.84 +0.0
648,399 + OH686_03090 0.84 -0.9
648,399 + OH686_03090 0.84 +0.4
648,399 + OH686_03090 0.84 +0.0
648,399 + OH686_03090 0.84 +0.9
648,399 + OH686_03090 0.84 -0.3
648,399 + OH686_03090 0.84 +0.3
648,400 - OH686_03090 0.84 -0.2
648,400 - OH686_03090 0.84 +1.0
648,400 - OH686_03090 0.84 -0.3
648,400 - OH686_03090 0.84 -0.2
648,400 - OH686_03090 0.84 +1.0
648,400 - OH686_03090 0.84 -0.4
648,400 - OH686_03090 0.84 -1.1
648,400 - OH686_03090 0.84 +0.1
648,406 + OH686_03090 0.85 +0.1
648,406 + OH686_03090 0.85 +0.2
648,406 + OH686_03090 0.85 +0.2
648,407 - OH686_03090 0.85 -1.3
648,407 - OH686_03090 0.85 -0.7
648,407 - OH686_03090 0.85 -0.5
648,407 - OH686_03090 0.85 +0.0
648,407 - OH686_03090 0.85 +0.5
648,444 + OH686_03090 0.86 -0.4
648,580 + +0.2
648,663 + -1.7
648,663 + -0.5
648,664 - +0.1
648,664 - +0.2
648,664 - +0.6
648,780 + -0.8
648,781 - -0.3
648,792 + +0.4
648,792 + +0.2
648,793 - +0.2
648,793 - -1.3
649,073 + OH686_03095 0.45 -0.5
649,073 + OH686_03095 0.45 +0.8
649,074 - OH686_03095 0.45 +0.3
649,074 - OH686_03095 0.45 +1.1
649,074 - OH686_03095 0.45 -0.4
649,074 - OH686_03095 0.45 -1.4
649,091 + OH686_03095 0.50 -1.7
649,091 + OH686_03095 0.50 -1.2
649,091 + OH686_03095 0.50 -0.3
649,091 + OH686_03095 0.50 -0.1
649,092 - OH686_03095 0.51 -1.1
649,092 - OH686_03095 0.51 -0.5
649,092 - OH686_03095 0.51 +1.0
649,092 - OH686_03095 0.51 -0.8
649,092 - OH686_03095 0.51 -0.9
649,260 + -1.1
649,261 - -0.5
649,261 - +0.1
649,261 - +0.1
649,261 - -1.5
649,270 + -1.2
649,270 + -0.9
649,270 + -0.1
649,270 + -0.6
649,270 + +0.3
649,270 + -0.7
649,270 + -0.1
649,270 + -0.1
649,270 + -0.1
649,271 - -0.4
649,271 - +0.1
649,271 - +0.2
649,271 - -0.4
649,271 - -1.7
649,271 - +1.0
649,271 - +0.6
649,271 - -0.0
649,271 - +0.2
649,271 - +0.9
649,271 - -0.1
649,274 + -0.7
649,274 + -0.3
649,274 + +0.3
649,274 + +0.7
649,274 + +0.1
649,275 - -0.0
649,275 - +0.3
649,275 - -0.7
649,302 + +1.5
649,302 + -1.7
649,303 - +0.2
649,340 + OH686_03100 0.11 +0.0
649,340 + OH686_03100 0.11 +0.3
649,340 + OH686_03100 0.11 +0.0
649,340 + OH686_03100 0.11 -0.7
649,340 + OH686_03100 0.11 -1.0
649,341 - OH686_03100 0.11 -0.6
649,341 - OH686_03100 0.11 +0.3
649,341 - OH686_03100 0.11 -0.0
649,392 + OH686_03100 0.26 -0.8
649,392 + OH686_03100 0.26 -0.8
649,392 + OH686_03100 0.26 +0.2
649,392 + OH686_03100 0.26 -0.2
649,392 + OH686_03100 0.26 -0.5
649,392 + OH686_03100 0.26 -0.8
649,393 - OH686_03100 0.26 -0.2
649,393 - OH686_03100 0.26 -0.4
649,608 + -1.0
649,700 + OH686_03105 0.11 +1.0
649,700 + OH686_03105 0.11 +0.9
649,701 - OH686_03105 0.11 +0.1
649,701 - OH686_03105 0.11 -0.7
649,701 - OH686_03105 0.11 -0.6
649,701 - OH686_03105 0.11 -1.1
649,751 + OH686_03105 0.15 +0.8
649,752 - OH686_03105 0.15 +0.6
649,752 - OH686_03105 0.15 +0.8
649,752 - OH686_03105 0.15 +0.5
649,752 - OH686_03105 0.15 +1.4
649,796 + OH686_03105 0.18 -0.2
649,796 + OH686_03105 0.18 -0.1
649,796 + OH686_03105 0.18 +0.1
649,796 + OH686_03105 0.18 +0.4
649,796 + OH686_03105 0.18 -0.4
649,797 - OH686_03105 0.18 -0.9
649,797 - OH686_03105 0.18 +0.6
649,797 - OH686_03105 0.18 +0.2
649,933 - OH686_03105 0.28 +0.4
649,933 - OH686_03105 0.28 -0.6
650,007 + OH686_03105 0.34 -0.3
650,007 + OH686_03105 0.34 -0.3
650,007 + OH686_03105 0.34 -2.8
650,008 - OH686_03105 0.34 +0.1
650,008 - OH686_03105 0.34 +0.1
650,008 - OH686_03105 0.34 -0.4
650,008 - OH686_03105 0.34 +0.5
650,008 - OH686_03105 0.34 +1.3
650,008 - OH686_03105 0.34 -0.8
650,008 - OH686_03105 0.34 -1.1
650,008 - OH686_03105 0.34 -2.5
650,008 - OH686_03105 0.34 -1.0
650,147 + OH686_03105 0.44 +0.9
650,147 + OH686_03105 0.44 -0.0
650,147 + OH686_03105 0.44 -0.1
650,147 + OH686_03105 0.44 -0.9
650,147 + OH686_03105 0.44 +0.1
650,148 - OH686_03105 0.44 -2.6
650,225 + OH686_03105 0.50 +0.3
650,225 + OH686_03105 0.50 +0.2
650,225 + OH686_03105 0.50 -0.2
650,226 - OH686_03105 0.50 +0.5
650,226 - OH686_03105 0.50 +0.3
650,226 - OH686_03105 0.50 -1.8
650,226 - OH686_03105 0.50 +0.4
650,226 - OH686_03105 0.50 -0.2
650,252 + OH686_03105 0.52 -0.4
650,252 + OH686_03105 0.52 +0.4
650,252 + OH686_03105 0.52 -0.3
650,253 - OH686_03105 0.52 -0.5

Or see this region's nucleotide sequence