Strain Fitness in Pseudomonas sp. S08-1 around OH686_00475

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00470 and OH686_00475 are separated by 76 nucleotidesOH686_00475 and OH686_00480 are separated by 18 nucleotidesOH686_00480 and OH686_00485 overlap by 4 nucleotidesOH686_00485 and OH686_00490 are separated by 118 nucleotides OH686_00470: OH686_00470 - Sensor histidine kinase/response regulator, at 90,475 to 92,550 _00470 OH686_00475: OH686_00475 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] , at 92,627 to 93,649 _00475 OH686_00480: OH686_00480 - Lipase , at 93,668 to 94,015 _00480 OH686_00485: OH686_00485 - phosphohistidine phosphatase SixA, at 94,012 to 94,464 _00485 OH686_00490: OH686_00490 - Long-chain-fatty-acid--CoA ligase , at 94,583 to 96,247 _00490 Position (kb) 92 93 94Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 91.772 kb on + strand, within OH686_00470at 91.772 kb on + strand, within OH686_00470at 91.773 kb on - strand, within OH686_00470at 91.867 kb on + strand, within OH686_00470at 91.867 kb on + strand, within OH686_00470at 91.868 kb on - strand, within OH686_00470at 91.868 kb on - strand, within OH686_00470at 91.868 kb on - strand, within OH686_00470at 91.888 kb on + strand, within OH686_00470at 91.888 kb on + strand, within OH686_00470at 91.888 kb on + strand, within OH686_00470at 91.888 kb on + strand, within OH686_00470at 91.888 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.889 kb on - strand, within OH686_00470at 91.890 kb on + strand, within OH686_00470at 91.890 kb on + strand, within OH686_00470at 91.890 kb on + strand, within OH686_00470at 91.890 kb on + strand, within OH686_00470at 91.890 kb on + strand, within OH686_00470at 91.890 kb on + strand, within OH686_00470at 91.890 kb on + strand, within OH686_00470at 91.890 kb on + strand, within OH686_00470at 91.890 kb on + strand, within OH686_00470at 91.890 kb on + strand, within OH686_00470at 91.891 kb on - strand, within OH686_00470at 91.891 kb on - strand, within OH686_00470at 91.891 kb on - strand, within OH686_00470at 91.968 kb on - strand, within OH686_00470at 91.968 kb on - strand, within OH686_00470at 92.057 kb on + strand, within OH686_00470at 92.057 kb on + strand, within OH686_00470at 92.057 kb on + strand, within OH686_00470at 92.057 kb on + strand, within OH686_00470at 92.337 kb on + strand, within OH686_00470at 92.337 kb on + strand, within OH686_00470at 92.338 kb on - strand, within OH686_00470at 92.338 kb on - strand, within OH686_00470at 92.363 kb on + strandat 92.586 kb on - strandat 92.586 kb on - strandat 92.586 kb on - strandat 92.626 kb on + strandat 92.626 kb on + strandat 92.626 kb on + strandat 92.626 kb on + strandat 92.626 kb on + strandat 92.626 kb on + strandat 92.626 kb on + strandat 92.626 kb on + strandat 92.626 kb on + strandat 92.626 kb on + strandat 92.627 kb on - strandat 92.627 kb on - strandat 92.627 kb on - strandat 92.627 kb on - strandat 92.627 kb on - strandat 92.653 kb on - strandat 92.653 kb on - strandat 92.780 kb on + strand, within OH686_00475at 92.781 kb on - strand, within OH686_00475at 93.152 kb on + strand, within OH686_00475at 93.152 kb on + strand, within OH686_00475at 93.152 kb on + strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.206 kb on + strand, within OH686_00475at 93.206 kb on + strand, within OH686_00475at 93.206 kb on + strand, within OH686_00475at 93.207 kb on - strand, within OH686_00475at 93.207 kb on - strand, within OH686_00475at 93.207 kb on - strand, within OH686_00475at 93.207 kb on - strand, within OH686_00475at 93.207 kb on - strand, within OH686_00475at 93.395 kb on + strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.478 kb on + strand, within OH686_00475at 93.478 kb on + strand, within OH686_00475at 93.479 kb on - strand, within OH686_00475at 93.479 kb on - strand, within OH686_00475at 93.479 kb on - strand, within OH686_00475at 93.479 kb on - strand, within OH686_00475at 93.479 kb on - strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.585 kb on + strandat 93.585 kb on + strandat 93.585 kb on + strandat 93.585 kb on + strandat 93.585 kb on + strandat 93.585 kb on + strandat 93.585 kb on + strandat 93.586 kb on - strandat 93.586 kb on - strandat 93.810 kb on - strand, within OH686_00480at 93.810 kb on - strand, within OH686_00480at 93.810 kb on - strand, within OH686_00480at 93.810 kb on - strand, within OH686_00480at 93.810 kb on - strand, within OH686_00480at 93.860 kb on + strand, within OH686_00480at 93.861 kb on - strand, within OH686_00480at 93.895 kb on + strand, within OH686_00480at 94.162 kb on + strand, within OH686_00485at 94.162 kb on + strand, within OH686_00485at 94.163 kb on - strand, within OH686_00485at 94.163 kb on - strand, within OH686_00485at 94.288 kb on + strand, within OH686_00485at 94.288 kb on + strand, within OH686_00485at 94.288 kb on + strand, within OH686_00485at 94.289 kb on - strand, within OH686_00485at 94.463 kb on - strandat 94.463 kb on - strandat 94.463 kb on - strandat 94.463 kb on - strandat 94.483 kb on + strandat 94.484 kb on - strandat 94.522 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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91,772 + OH686_00470 0.62 +0.3
91,772 + OH686_00470 0.62 -0.4
91,773 - OH686_00470 0.63 -0.3
91,867 + OH686_00470 0.67 -0.5
91,867 + OH686_00470 0.67 +0.5
91,868 - OH686_00470 0.67 -0.2
91,868 - OH686_00470 0.67 -0.4
91,868 - OH686_00470 0.67 +0.0
91,888 + OH686_00470 0.68 -1.6
91,888 + OH686_00470 0.68 -0.3
91,888 + OH686_00470 0.68 -0.1
91,888 + OH686_00470 0.68 +0.6
91,888 - OH686_00470 0.68 -0.3
91,889 - OH686_00470 0.68 -2.1
91,889 - OH686_00470 0.68 +0.6
91,889 - OH686_00470 0.68 -0.1
91,889 - OH686_00470 0.68 +0.5
91,889 - OH686_00470 0.68 +0.2
91,889 - OH686_00470 0.68 -0.2
91,889 - OH686_00470 0.68 -0.6
91,889 - OH686_00470 0.68 -0.0
91,889 - OH686_00470 0.68 -0.4
91,889 - OH686_00470 0.68 -0.2
91,889 - OH686_00470 0.68 +0.1
91,889 - OH686_00470 0.68 -0.2
91,889 - OH686_00470 0.68 -0.2
91,889 - OH686_00470 0.68 -0.6
91,889 - OH686_00470 0.68 +0.1
91,890 + OH686_00470 0.68 +0.9
91,890 + OH686_00470 0.68 -0.3
91,890 + OH686_00470 0.68 -0.1
91,890 + OH686_00470 0.68 +0.1
91,890 + OH686_00470 0.68 -0.5
91,890 + OH686_00470 0.68 +0.7
91,890 + OH686_00470 0.68 +2.3
91,890 + OH686_00470 0.68 +0.1
91,890 + OH686_00470 0.68 +0.1
91,890 + OH686_00470 0.68 +0.0
91,891 - OH686_00470 0.68 +0.3
91,891 - OH686_00470 0.68 +0.2
91,891 - OH686_00470 0.68 +0.5
91,968 - OH686_00470 0.72 +0.1
91,968 - OH686_00470 0.72 +0.0
92,057 + OH686_00470 0.76 +0.6
92,057 + OH686_00470 0.76 -0.1
92,057 + OH686_00470 0.76 -0.1
92,057 + OH686_00470 0.76 +0.1
92,337 + OH686_00470 0.90 +0.2
92,337 + OH686_00470 0.90 -1.1
92,338 - OH686_00470 0.90 +0.1
92,338 - OH686_00470 0.90 -0.1
92,363 + -0.2
92,586 - -0.2
92,586 - -0.5
92,586 - -1.1
92,626 + +0.6
92,626 + +0.2
92,626 + -0.4
92,626 + +1.3
92,626 + +0.0
92,626 + -0.6
92,626 + -0.1
92,626 + -0.1
92,626 + -0.0
92,626 + -0.2
92,627 - -1.0
92,627 - -2.6
92,627 - +0.5
92,627 - -0.4
92,627 - -1.2
92,653 - -2.2
92,653 - -0.1
92,780 + OH686_00475 0.15 -2.8
92,781 - OH686_00475 0.15 -4.0
93,152 + OH686_00475 0.51 -2.3
93,152 + OH686_00475 0.51 -3.7
93,152 + OH686_00475 0.51 -3.9
93,153 - OH686_00475 0.51 -1.6
93,153 - OH686_00475 0.51 -2.9
93,153 - OH686_00475 0.51 -3.2
93,153 - OH686_00475 0.51 -2.8
93,153 - OH686_00475 0.51 -3.3
93,153 - OH686_00475 0.51 -1.2
93,153 - OH686_00475 0.51 -1.4
93,206 + OH686_00475 0.57 -2.0
93,206 + OH686_00475 0.57 -2.5
93,206 + OH686_00475 0.57 -3.0
93,207 - OH686_00475 0.57 -1.2
93,207 - OH686_00475 0.57 -2.9
93,207 - OH686_00475 0.57 -0.4
93,207 - OH686_00475 0.57 -1.2
93,207 - OH686_00475 0.57 -1.5
93,395 + OH686_00475 0.75 -2.1
93,396 - OH686_00475 0.75 -3.0
93,396 - OH686_00475 0.75 -4.1
93,396 - OH686_00475 0.75 -2.8
93,396 - OH686_00475 0.75 -3.8
93,396 - OH686_00475 0.75 -2.0
93,396 - OH686_00475 0.75 -1.4
93,396 - OH686_00475 0.75 -0.6
93,396 - OH686_00475 0.75 -2.0
93,396 - OH686_00475 0.75 -3.9
93,478 + OH686_00475 0.83 -4.0
93,478 + OH686_00475 0.83 -4.3
93,479 - OH686_00475 0.83 -3.3
93,479 - OH686_00475 0.83 -4.1
93,479 - OH686_00475 0.83 -1.1
93,479 - OH686_00475 0.83 -2.9
93,479 - OH686_00475 0.83 -3.0
93,521 + OH686_00475 0.87 -3.0
93,521 + OH686_00475 0.87 -3.3
93,521 + OH686_00475 0.87 -3.7
93,521 + OH686_00475 0.87 -3.8
93,521 + OH686_00475 0.87 -1.8
93,521 + OH686_00475 0.87 -0.9
93,521 + OH686_00475 0.87 -4.3
93,521 + OH686_00475 0.87 -0.1
93,521 + OH686_00475 0.87 -2.3
93,521 + OH686_00475 0.87 -1.6
93,521 + OH686_00475 0.87 -1.6
93,521 + OH686_00475 0.87 -3.5
93,521 + OH686_00475 0.87 -4.1
93,521 + OH686_00475 0.87 -3.1
93,521 + OH686_00475 0.87 -4.1
93,521 + OH686_00475 0.87 -3.1
93,521 + OH686_00475 0.87 -4.1
93,521 + OH686_00475 0.87 -2.1
93,521 + OH686_00475 0.87 -3.4
93,521 + OH686_00475 0.87 -0.6
93,521 + OH686_00475 0.87 -4.5
93,521 + OH686_00475 0.87 -3.2
93,522 - OH686_00475 0.87 -2.1
93,522 - OH686_00475 0.87 -3.3
93,522 - OH686_00475 0.87 -1.5
93,522 - OH686_00475 0.87 -0.1
93,522 - OH686_00475 0.87 -2.2
93,522 - OH686_00475 0.87 -1.5
93,522 - OH686_00475 0.87 -3.6
93,522 - OH686_00475 0.87 -2.0
93,522 - OH686_00475 0.87 -2.5
93,522 - OH686_00475 0.87 -1.4
93,522 - OH686_00475 0.87 -1.9
93,522 - OH686_00475 0.87 -2.3
93,522 - OH686_00475 0.87 -2.3
93,522 - OH686_00475 0.87 -3.2
93,522 - OH686_00475 0.87 -0.6
93,522 - OH686_00475 0.87 -0.9
93,522 - OH686_00475 0.87 -3.2
93,522 - OH686_00475 0.87 -2.7
93,522 - OH686_00475 0.87 -0.4
93,522 - OH686_00475 0.87 -0.9
93,522 - OH686_00475 0.87 -2.7
93,522 - OH686_00475 0.87 -1.5
93,522 - OH686_00475 0.87 -2.1
93,522 - OH686_00475 0.87 -2.9
93,522 - OH686_00475 0.87 -2.9
93,522 - OH686_00475 0.87 -2.0
93,585 + -0.3
93,585 + -1.2
93,585 + +0.2
93,585 + -0.6
93,585 + -0.5
93,585 + -0.9
93,585 + -0.5
93,586 - -3.0
93,586 - -1.8
93,810 - OH686_00480 0.41 +0.7
93,810 - OH686_00480 0.41 +0.1
93,810 - OH686_00480 0.41 +0.2
93,810 - OH686_00480 0.41 -1.3
93,810 - OH686_00480 0.41 -0.3
93,860 + OH686_00480 0.55 +0.3
93,861 - OH686_00480 0.55 -0.7
93,895 + OH686_00480 0.65 -0.4
94,162 + OH686_00485 0.33 -0.1
94,162 + OH686_00485 0.33 -0.2
94,163 - OH686_00485 0.33 -0.4
94,163 - OH686_00485 0.33 +0.5
94,288 + OH686_00485 0.61 -1.2
94,288 + OH686_00485 0.61 +0.4
94,288 + OH686_00485 0.61 +1.1
94,289 - OH686_00485 0.61 +0.5
94,463 - +0.0
94,463 - -0.1
94,463 - +0.8
94,463 - -0.3
94,483 + -3.0
94,484 - +0.5
94,522 + +0.9

Or see this region's nucleotide sequence