Experiment: Neomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04360 and PS417_04365 are separated by 8 nucleotides PS417_04365 and PS417_04370 are separated by 0 nucleotides PS417_04370 and PS417_04375 are separated by 298 nucleotides
PS417_04360: PS417_04360 - lipopolysaccharide ABC transporter permease, at 973,981 to 974,553
_04360
PS417_04365: PS417_04365 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 974,562 to 975,086
_04365
PS417_04370: PS417_04370 - D-arabinose 5-phosphate isomerase, at 975,087 to 976,061
_04370
PS417_04375: PS417_04375 - ABC transporter ATP-binding protein, at 976,360 to 977,169
_04375
Position (kb) 975
976
977 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 974.564 kb on - strand at 974.566 kb on - strand at 974.566 kb on - strand at 974.566 kb on - strand at 974.780 kb on - strand, within PS417_04365 at 974.785 kb on - strand, within PS417_04365 at 975.089 kb on - strand at 976.074 kb on - strand at 976.076 kb on - strand at 976.076 kb on - strand at 976.244 kb on - strand at 976.245 kb on + strand at 976.245 kb on + strand at 976.246 kb on - strand at 976.246 kb on - strand at 976.287 kb on + strand at 976.287 kb on + strand at 976.287 kb on + strand at 976.288 kb on - strand at 976.357 kb on + strand at 976.434 kb on + strand at 976.617 kb on + strand, within PS417_04375 at 976.618 kb on - strand, within PS417_04375 at 976.755 kb on - strand, within PS417_04375 at 976.862 kb on - strand, within PS417_04375 at 977.000 kb on - strand, within PS417_04375 at 977.006 kb on - strand, within PS417_04375
Per-strain Table
Position Strand Gene LocusTag Fraction Neomycin 0.04 mg/ml remove 974,564 - +0.9 974,566 - -0.5 974,566 - -0.1 974,566 - +0.6 974,780 - PS417_04365 0.42 +3.3 974,785 - PS417_04365 0.42 +3.7 975,089 - +3.5 976,074 - -0.2 976,076 - +0.9 976,076 - +1.0 976,244 - +1.2 976,245 + -1.7 976,245 + -1.9 976,246 - +0.6 976,246 - +0.9 976,287 + -1.4 976,287 + -1.6 976,287 + -2.1 976,288 - +0.8 976,357 + +0.1 976,434 + -0.8 976,617 + PS417_04375 0.32 +0.2 976,618 - PS417_04375 0.32 +0.7 976,755 - PS417_04375 0.49 +0.0 976,862 - PS417_04375 0.62 +2.1 977,000 - PS417_04375 0.79 +1.3 977,006 - PS417_04375 0.80 +0.5
Or see this region's nucleotide sequence