Strain Fitness in Pseudomonas simiae WCS417 around PS417_04225

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
945,829	+		PS417_04215	0.38	+1.0
945,886	+		PS417_04215	0.44	-0.2
945,887	-		PS417_04215	0.44	-0.1
945,920	-		PS417_04215	0.48	+0.2
945,920	-		PS417_04215	0.48	-0.7
946,252	+		PS417_04215	0.83	-0.2
946,252	+		PS417_04215	0.83	+0.0
946,253	-		PS417_04215	0.83	+0.3
946,408	+				+0.2
946,409	-				-0.9
946,484	-		PS417_04220	0.20	+0.4
946,866	+				-1.1
946,866	+				-0.8
946,866	+				-1.2
946,866	+				-0.7
946,866	+				-1.6
946,867	-				+1.5
946,869	+				-0.9
946,869	+				-0.2
946,869	+				-1.2
946,869	+				-0.2
946,870	-				-1.7
946,870	-				-2.4
946,870	-				-1.3
946,870	-				-1.3
946,915	+		PS417_04225	0.13	-1.7
946,915	+		PS417_04225	0.13	-1.5
947,620	+		PS417_04225	0.80	-1.8
948,131	+		PS417_04230	0.65	-0.5
948,132	-		PS417_04230	0.65	-0.2
948,132	-		PS417_04230	0.65	+0.2
948,157	+		PS417_04230	0.72	+0.2
948,157	+		PS417_04230	0.72	-0.8
948,158	-		PS417_04230	0.72	-0.1
948,158	-		PS417_04230	0.72	+0.0
948,312	+				-0.4
948,313	-				-1.8