Strain Fitness in Pseudomonas simiae WCS417 around PS417_25095

Experiment: Neomycin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25090 and PS417_25095 overlap by 4 nucleotidesPS417_25095 and PS417_25100 are separated by 75 nucleotides PS417_25090: PS417_25090 - hypothetical protein, at 5,440,667 to 5,441,941 _25090 PS417_25095: PS417_25095 - hypothetical protein, at 5,441,938 to 5,442,360 _25095 PS417_25100: PS417_25100 - hypothetical protein, at 5,442,436 to 5,443,827 _25100 Position (kb) 5441 5442 5443Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5440.962 kb on + strand, within PS417_25090at 5441.092 kb on + strand, within PS417_25090at 5441.092 kb on + strand, within PS417_25090at 5441.092 kb on + strand, within PS417_25090at 5441.092 kb on + strand, within PS417_25090at 5441.092 kb on + strand, within PS417_25090at 5441.093 kb on - strand, within PS417_25090at 5441.093 kb on - strand, within PS417_25090at 5441.093 kb on - strand, within PS417_25090at 5441.093 kb on - strand, within PS417_25090at 5441.093 kb on - strand, within PS417_25090at 5441.094 kb on + strand, within PS417_25090at 5441.095 kb on - strand, within PS417_25090at 5441.111 kb on - strand, within PS417_25090at 5441.128 kb on + strand, within PS417_25090at 5441.129 kb on - strand, within PS417_25090at 5441.145 kb on + strand, within PS417_25090at 5441.146 kb on - strand, within PS417_25090at 5441.190 kb on + strand, within PS417_25090at 5441.223 kb on + strand, within PS417_25090at 5441.223 kb on + strand, within PS417_25090at 5441.224 kb on - strand, within PS417_25090at 5441.330 kb on + strand, within PS417_25090at 5441.330 kb on + strand, within PS417_25090at 5441.331 kb on - strand, within PS417_25090at 5441.331 kb on - strand, within PS417_25090at 5441.331 kb on - strand, within PS417_25090at 5441.380 kb on + strand, within PS417_25090at 5441.385 kb on - strand, within PS417_25090at 5441.436 kb on + strand, within PS417_25090at 5441.436 kb on + strand, within PS417_25090at 5441.437 kb on - strand, within PS417_25090at 5441.437 kb on - strand, within PS417_25090at 5441.437 kb on - strand, within PS417_25090at 5441.437 kb on - strand, within PS417_25090at 5441.460 kb on + strand, within PS417_25090at 5441.460 kb on + strandat 5441.461 kb on - strand, within PS417_25090at 5441.461 kb on - strand, within PS417_25090at 5441.553 kb on + strand, within PS417_25090at 5441.553 kb on + strand, within PS417_25090at 5441.597 kb on + strand, within PS417_25090at 5441.598 kb on - strand, within PS417_25090at 5441.598 kb on - strand, within PS417_25090at 5441.601 kb on - strand, within PS417_25090at 5441.614 kb on + strand, within PS417_25090at 5441.614 kb on + strandat 5441.614 kb on + strand, within PS417_25090at 5441.614 kb on + strand, within PS417_25090at 5441.614 kb on + strand, within PS417_25090at 5441.614 kb on + strand, within PS417_25090at 5441.615 kb on - strand, within PS417_25090at 5441.615 kb on - strandat 5441.615 kb on - strand, within PS417_25090at 5441.671 kb on - strand, within PS417_25090at 5441.742 kb on + strand, within PS417_25090at 5441.742 kb on + strand, within PS417_25090at 5441.742 kb on + strand, within PS417_25090at 5441.743 kb on - strand, within PS417_25090at 5441.835 kb on - strandat 5441.966 kb on + strandat 5441.967 kb on - strandat 5442.167 kb on + strand, within PS417_25095at 5442.167 kb on + strand, within PS417_25095at 5442.167 kb on + strand, within PS417_25095at 5442.167 kb on + strand, within PS417_25095at 5442.168 kb on - strand, within PS417_25095at 5442.168 kb on - strand, within PS417_25095at 5442.269 kb on + strand, within PS417_25095at 5442.347 kb on - strandat 5442.347 kb on - strandat 5442.347 kb on - strandat 5442.400 kb on - strandat 5442.400 kb on - strandat 5442.444 kb on + strandat 5442.444 kb on + strandat 5442.445 kb on - strandat 5442.510 kb on + strandat 5442.511 kb on - strandat 5442.511 kb on - strandat 5442.511 kb on - strandat 5442.518 kb on + strandat 5442.518 kb on + strandat 5442.518 kb on + strandat 5442.718 kb on + strand, within PS417_25100at 5442.718 kb on + strand, within PS417_25100at 5442.718 kb on + strand, within PS417_25100at 5442.719 kb on - strand, within PS417_25100at 5442.719 kb on - strand, within PS417_25100at 5442.727 kb on + strand, within PS417_25100at 5442.727 kb on + strand, within PS417_25100at 5442.727 kb on + strand, within PS417_25100at 5442.727 kb on + strand, within PS417_25100at 5442.902 kb on - strand, within PS417_25100at 5443.055 kb on - strand, within PS417_25100at 5443.160 kb on + strand, within PS417_25100at 5443.161 kb on - strand, within PS417_25100at 5443.161 kb on - strand, within PS417_25100at 5443.161 kb on - strand, within PS417_25100at 5443.172 kb on - strand, within PS417_25100at 5443.205 kb on + strand, within PS417_25100at 5443.205 kb on + strand, within PS417_25100at 5443.206 kb on - strand, within PS417_25100at 5443.206 kb on - strand, within PS417_25100at 5443.206 kb on - strand, within PS417_25100at 5443.230 kb on + strand, within PS417_25100at 5443.231 kb on - strand, within PS417_25100at 5443.254 kb on + strand, within PS417_25100at 5443.293 kb on + strand, within PS417_25100at 5443.293 kb on + strand, within PS417_25100at 5443.294 kb on - strand, within PS417_25100

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Per-strain Table

Position Strand Gene LocusTag Fraction Neomycin 0.04 mg/ml
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5,440,962 + PS417_25090 0.23 +0.3
5,441,092 + PS417_25090 0.33 -0.3
5,441,092 + PS417_25090 0.33 -0.7
5,441,092 + PS417_25090 0.33 +1.0
5,441,092 + PS417_25090 0.33 -0.5
5,441,092 + PS417_25090 0.33 +0.4
5,441,093 - PS417_25090 0.33 -0.1
5,441,093 - PS417_25090 0.33 +0.0
5,441,093 - PS417_25090 0.33 -0.3
5,441,093 - PS417_25090 0.33 +0.7
5,441,093 - PS417_25090 0.33 -0.3
5,441,094 + PS417_25090 0.33 +0.3
5,441,095 - PS417_25090 0.34 -1.1
5,441,111 - PS417_25090 0.35 -1.0
5,441,128 + PS417_25090 0.36 +0.1
5,441,129 - PS417_25090 0.36 -0.9
5,441,145 + PS417_25090 0.37 -0.2
5,441,146 - PS417_25090 0.38 -0.3
5,441,190 + PS417_25090 0.41 -0.6
5,441,223 + PS417_25090 0.44 -1.6
5,441,223 + PS417_25090 0.44 -0.7
5,441,224 - PS417_25090 0.44 -0.8
5,441,330 + PS417_25090 0.52 -0.5
5,441,330 + PS417_25090 0.52 -1.4
5,441,331 - PS417_25090 0.52 -0.0
5,441,331 - PS417_25090 0.52 +0.8
5,441,331 - PS417_25090 0.52 -0.2
5,441,380 + PS417_25090 0.56 -0.0
5,441,385 - PS417_25090 0.56 +0.2
5,441,436 + PS417_25090 0.60 +0.5
5,441,436 + PS417_25090 0.60 -0.9
5,441,437 - PS417_25090 0.60 -0.4
5,441,437 - PS417_25090 0.60 -0.2
5,441,437 - PS417_25090 0.60 -0.8
5,441,437 - PS417_25090 0.60 +1.6
5,441,460 + PS417_25090 0.62 -0.9
5,441,460 + +0.8
5,441,461 - PS417_25090 0.62 -0.1
5,441,461 - PS417_25090 0.62 +0.0
5,441,553 + PS417_25090 0.69 +1.5
5,441,553 + PS417_25090 0.69 -0.3
5,441,597 + PS417_25090 0.73 +0.1
5,441,598 - PS417_25090 0.73 +1.0
5,441,598 - PS417_25090 0.73 +0.2
5,441,601 - PS417_25090 0.73 +0.2
5,441,614 + PS417_25090 0.74 -0.4
5,441,614 + +2.5
5,441,614 + PS417_25090 0.74 +0.3
5,441,614 + PS417_25090 0.74 +0.2
5,441,614 + PS417_25090 0.74 +0.4
5,441,614 + PS417_25090 0.74 +0.2
5,441,615 - PS417_25090 0.74 -0.1
5,441,615 - -0.3
5,441,615 - PS417_25090 0.74 -2.0
5,441,671 - PS417_25090 0.79 -0.2
5,441,742 + PS417_25090 0.84 +0.8
5,441,742 + PS417_25090 0.84 -0.5
5,441,742 + PS417_25090 0.84 -0.9
5,441,743 - PS417_25090 0.84 +0.9
5,441,835 - -0.1
5,441,966 + -0.4
5,441,967 - +0.3
5,442,167 + PS417_25095 0.54 -0.5
5,442,167 + PS417_25095 0.54 +0.4
5,442,167 + PS417_25095 0.54 +0.2
5,442,167 + PS417_25095 0.54 -0.0
5,442,168 - PS417_25095 0.54 -0.7
5,442,168 - PS417_25095 0.54 +0.7
5,442,269 + PS417_25095 0.78 +0.0
5,442,347 - +0.2
5,442,347 - +0.3
5,442,347 - -0.8
5,442,400 - +2.3
5,442,400 - +3.5
5,442,444 + +0.3
5,442,444 + +0.2
5,442,445 - +3.0
5,442,510 + +0.2
5,442,511 - +3.5
5,442,511 - +3.0
5,442,511 - +3.7
5,442,518 + +0.0
5,442,518 + -1.1
5,442,518 + +0.8
5,442,718 + PS417_25100 0.20 -0.1
5,442,718 + PS417_25100 0.20 -0.0
5,442,718 + PS417_25100 0.20 +0.9
5,442,719 - PS417_25100 0.20 +3.6
5,442,719 - PS417_25100 0.20 +3.9
5,442,727 + PS417_25100 0.21 -0.6
5,442,727 + PS417_25100 0.21 +1.0
5,442,727 + PS417_25100 0.21 -0.7
5,442,727 + PS417_25100 0.21 +0.1
5,442,902 - PS417_25100 0.33 +3.2
5,443,055 - PS417_25100 0.44 +1.5
5,443,160 + PS417_25100 0.52 +0.6
5,443,161 - PS417_25100 0.52 +3.1
5,443,161 - PS417_25100 0.52 +1.1
5,443,161 - PS417_25100 0.52 +3.1
5,443,172 - PS417_25100 0.53 +3.7
5,443,205 + PS417_25100 0.55 +0.3
5,443,205 + PS417_25100 0.55 -0.2
5,443,206 - PS417_25100 0.55 +3.7
5,443,206 - PS417_25100 0.55 +3.1
5,443,206 - PS417_25100 0.55 +2.8
5,443,230 + PS417_25100 0.57 +0.3
5,443,231 - PS417_25100 0.57 +2.8
5,443,254 + PS417_25100 0.59 +0.5
5,443,293 + PS417_25100 0.62 -0.5
5,443,293 + PS417_25100 0.62 -0.0
5,443,294 - PS417_25100 0.62 +3.1

Or see this region's nucleotide sequence