Experiment: Neomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24610 and PS417_24615 are separated by 225 nucleotides PS417_24615 and PS417_24620 are separated by 128 nucleotides PS417_24620 and PS417_24625 are separated by 131 nucleotides
PS417_24610: PS417_24610 - glutamate-1-semialdehyde 2,1-aminomutase, at 5,340,659 to 5,341,942
_24610
PS417_24615: PS417_24615 - hypothetical protein, at 5,342,168 to 5,342,722
_24615
PS417_24620: PS417_24620 - hypothetical protein, at 5,342,851 to 5,343,177
_24620
PS417_24625: PS417_24625 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 5,343,309 to 5,344,637
_24625
Position (kb) 5342
5343 Strain fitness (log2 ratio) -1
0
1
2 at 5342.044 kb on + strand at 5342.044 kb on + strand at 5342.083 kb on + strand at 5342.099 kb on + strand at 5342.099 kb on + strand at 5342.099 kb on + strand at 5342.099 kb on + strand at 5342.106 kb on + strand at 5342.155 kb on + strand at 5342.432 kb on + strand, within PS417_24615 at 5342.666 kb on + strand, within PS417_24615 at 5342.667 kb on - strand at 5342.852 kb on + strand at 5343.095 kb on + strand, within PS417_24620 at 5343.095 kb on + strand, within PS417_24620 at 5343.096 kb on - strand, within PS417_24620 at 5343.096 kb on - strand, within PS417_24620 at 5343.111 kb on - strand, within PS417_24620 at 5343.151 kb on - strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.153 kb on - strand at 5343.153 kb on - strand at 5343.153 kb on - strand at 5343.204 kb on + strand at 5343.221 kb on + strand at 5343.222 kb on - strand at 5343.222 kb on - strand at 5343.223 kb on + strand at 5343.223 kb on + strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.324 kb on + strand at 5343.324 kb on + strand at 5343.324 kb on + strand at 5343.325 kb on - strand at 5343.325 kb on - strand at 5343.487 kb on - strand, within PS417_24625 at 5343.601 kb on - strand, within PS417_24625
Per-strain Table
Position Strand Gene LocusTag Fraction Neomycin 0.04 mg/ml remove 5,342,044 + -1.2 5,342,044 + -1.2 5,342,083 + -0.2 5,342,099 + -1.5 5,342,099 + -1.6 5,342,099 + -0.9 5,342,099 + -1.3 5,342,106 + -0.5 5,342,155 + +1.3 5,342,432 + PS417_24615 0.48 +1.2 5,342,666 + PS417_24615 0.90 -1.5 5,342,667 - -1.6 5,342,852 + -0.1 5,343,095 + PS417_24620 0.75 +0.5 5,343,095 + PS417_24620 0.75 +0.3 5,343,096 - PS417_24620 0.75 +0.3 5,343,096 - PS417_24620 0.75 -0.7 5,343,111 - PS417_24620 0.80 -0.8 5,343,151 - +0.5 5,343,152 + -1.6 5,343,152 + +0.1 5,343,152 + -1.4 5,343,152 + -0.0 5,343,152 + -0.1 5,343,152 + -0.5 5,343,152 + -0.0 5,343,152 + -0.5 5,343,152 + +1.3 5,343,153 - -0.8 5,343,153 - +0.3 5,343,153 - -0.8 5,343,204 + -0.2 5,343,221 + +0.1 5,343,222 - +0.9 5,343,222 - +0.8 5,343,223 + -0.2 5,343,223 + -0.9 5,343,272 - +0.8 5,343,272 - +0.9 5,343,272 - +0.3 5,343,272 - +1.5 5,343,272 - -1.3 5,343,324 + +0.9 5,343,324 + +0.3 5,343,324 + +1.9 5,343,325 - +0.7 5,343,325 - +1.3 5,343,487 - PS417_24625 0.13 +0.5 5,343,601 - PS417_24625 0.22 +1.1
Or see this region's nucleotide sequence