Strain Fitness in Pseudomonas simiae WCS417 around PS417_22845

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
4,948,145	+				-0.3
4,948,146	-				+0.1
4,948,188	+				+1.2
4,948,188	+				-0.4
4,948,189	-				-0.5
4,948,190	+				+0.5
4,948,237	+				+0.0
4,948,237	+				-0.0
4,948,237	+				+0.6
4,948,238	-				+0.2
4,948,239	+				+0.0
4,948,240	-				-0.8
4,948,242	-				+0.1
4,948,242	-				+2.3
4,948,599	+				-0.4
4,948,647	+				+2.1
4,948,648	-				-0.7
4,948,685	+				+0.2
4,948,772	-		PS417_22840	0.27	-1.0
4,948,772	-		PS417_22840	0.27	-0.7
4,948,954	+				+0.2
4,949,024	+				+0.3
4,949,034	+				+0.5
4,949,056	-				-0.6
4,949,199	+				-0.4
4,949,230	+				-0.3
4,949,230	+				-0.2
4,949,231	-				-0.7
4,949,272	+				-0.2
4,949,272	+				+1.5
4,949,289	+				+0.4
4,949,375	-		PS417_22845	0.10	-0.5
4,949,451	-		PS417_22845	0.13	-1.0
4,949,518	+		PS417_22845	0.16	-0.2
4,949,518	+		PS417_22845	0.16	+0.0
4,949,519	-		PS417_22845	0.16	-0.9
4,949,520	+		PS417_22845	0.16	-0.2
4,949,520	+		PS417_22845	0.16	-0.3
4,949,649	+		PS417_22845	0.21	-0.6
4,949,730	+		PS417_22845	0.24	-0.8
4,949,875	+		PS417_22845	0.29	-0.6
4,949,876	-		PS417_22845	0.29	+0.0
4,949,876	-		PS417_22845	0.29	-0.5
4,949,876	-		PS417_22845	0.29	-0.3
4,949,876	-		PS417_22845	0.29	-0.5
4,949,876	-		PS417_22845	0.29	-0.7
4,949,877	+		PS417_22845	0.29	-0.2
4,949,877	+		PS417_22845	0.29	-0.9
4,949,877	+				+2.8
4,949,877	+		PS417_22845	0.29	-0.1
4,949,877	+		PS417_22845	0.29	-0.4
4,949,877	+		PS417_22845	0.29	-1.1
4,949,877	+		PS417_22845	0.29	-0.3
4,949,878	-		PS417_22845	0.29	-0.6
4,949,878	-		PS417_22845	0.29	-0.7
4,949,878	-		PS417_22845	0.29	-0.1
4,949,878	-		PS417_22845	0.29	-0.6
4,949,879	+		PS417_22845	0.29	+0.5
4,949,879	+		PS417_22845	0.29	-0.3
4,949,879	+		PS417_22845	0.29	-0.2
4,949,879	+		PS417_22845	0.29	-1.2
4,949,879	+		PS417_22845	0.29	-0.6
4,949,879	+		PS417_22845	0.29	-0.3
4,949,879	+		PS417_22845	0.29	-0.2
4,949,879	+		PS417_22845	0.29	+0.2
4,949,879	+		PS417_22845	0.29	-0.4
4,949,879	+		PS417_22845	0.29	-0.8
4,949,880	-		PS417_22845	0.29	-0.5
4,949,880	-		PS417_22845	0.29	-1.1
4,949,880	-		PS417_22845	0.29	-0.4
4,949,880	-		PS417_22845	0.29	+0.2
4,949,880	-		PS417_22845	0.29	+0.1
4,949,880	-		PS417_22845	0.29	+0.0
4,949,880	-		PS417_22845	0.29	+0.4
4,949,880	-		PS417_22845	0.29	-1.6
4,949,925	+		PS417_22845	0.31	-0.3
4,950,054	+		PS417_22845	0.36	-2.5
4,950,067	-		PS417_22845	0.36	-0.3
4,950,067	-		PS417_22845	0.36	-0.5
4,950,543	+		PS417_22845	0.54	+0.2
4,950,543	+		PS417_22845	0.54	-0.1
4,950,544	-		PS417_22845	0.54	-0.6
4,950,882	+		PS417_22845	0.67	-2.9
4,950,883	-		PS417_22845	0.67	-0.2
4,950,915	+		PS417_22845	0.68	+0.4
4,950,915	+		PS417_22845	0.68	+0.6
4,950,916	-		PS417_22845	0.68	-0.3
4,951,006	-		PS417_22845	0.72	-0.3
4,951,032	+		PS417_22845	0.73	+1.3
4,951,032	+		PS417_22845	0.73	-1.3
4,951,033	-		PS417_22845	0.73	-1.0
4,951,035	+				-0.7
4,951,035	+		PS417_22845	0.73	+0.3
4,951,035	+		PS417_22845	0.73	+0.2
4,951,035	+		PS417_22845	0.73	+1.6
4,951,035	+		PS417_22845	0.73	-0.2
4,951,035	+		PS417_22845	0.73	-0.5
4,951,036	-		PS417_22845	0.73	-0.9
4,951,037	+		PS417_22845	0.73	+1.2
4,951,037	+		PS417_22845	0.73	+0.3
4,951,256	-		PS417_22845	0.81	-0.4
4,951,297	-		PS417_22845	0.83	+0.0
4,951,371	+		PS417_22845	0.86	+1.1
4,951,371	+		PS417_22845	0.86	+0.5
4,951,372	-		PS417_22845	0.86	+0.1
4,951,372	-		PS417_22845	0.86	+0.1
4,951,372	-		PS417_22845	0.86	-0.2
4,951,467	+		PS417_22845	0.89	+0.8
4,951,467	+		PS417_22845	0.89	-0.5
4,951,468	-		PS417_22845	0.89	-0.5
4,951,469	+		PS417_22845	0.89	+0.3
4,951,469	+		PS417_22845	0.89	-1.2
4,951,470	-		PS417_22845	0.89	-1.2
4,951,470	-		PS417_22845	0.89	-0.1
4,951,482	+		PS417_22845	0.90	+0.1
4,951,594	-				-1.6
4,951,595	+				-0.0
4,951,654	-				-0.0
4,951,773	+				-0.6
4,951,773	+				-0.0
4,951,774	-				-1.1
4,951,774	-				-0.1
4,951,774	-				+0.3
4,951,786	-				-0.3
4,951,786	-				-0.5
4,952,561	+		PS417_22850	0.64	+1.6
4,952,696	+		PS417_22850	0.74	-0.1
4,952,696	+		PS417_22850	0.74	+1.5
4,952,696	+		PS417_22850	0.74	+0.0
4,952,697	-		PS417_22850	0.74	+0.4
4,952,697	-		PS417_22850	0.74	+1.8
4,952,697	-		PS417_22850	0.74	+0.3
4,952,741	-		PS417_22850	0.78	-0.0
4,952,741	-		PS417_22850	0.78	+0.5
4,952,741	-		PS417_22850	0.78	+0.1