Strain Fitness in Pseudomonas simiae WCS417 around PS417_20665

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
4,489,812	+		PS417_20655	0.71	+2.4
4,489,812	+		PS417_20655	0.71	+1.8
4,489,820	+		PS417_20655	0.72	+2.4
4,489,820	+		PS417_20655	0.72	+2.1
4,489,820	+		PS417_20655	0.72	+4.2
4,489,821	-		PS417_20655	0.72	+1.9
4,489,821	-		PS417_20655	0.72	+2.6
4,489,821	-		PS417_20655	0.72	+2.5
4,489,876	+		PS417_20655	0.77	+2.5
4,489,877	-		PS417_20655	0.77	+2.6
4,489,986	+		PS417_20655	0.87	+2.8
4,489,986	+		PS417_20655	0.87	+3.1
4,489,986	+		PS417_20655	0.87	+2.0
4,489,987	-		PS417_20655	0.87	+3.8
4,490,051	+				+3.6
4,490,248	+		PS417_20660	0.24	+2.3
4,490,290	-		PS417_20660	0.32	+1.7
4,490,312	-		PS417_20660	0.36	+2.8
4,490,312	-		PS417_20660	0.36	+2.9
4,490,431	+		PS417_20660	0.59	+2.4
4,490,432	-		PS417_20660	0.59	+3.4
4,490,432	-		PS417_20660	0.59	+2.5
4,490,432	-		PS417_20660	0.59	+2.5
4,490,434	-		PS417_20660	0.59	+1.4
4,490,504	+		PS417_20660	0.73	+2.4
4,490,505	-		PS417_20660	0.73	+1.4
4,490,543	-		PS417_20660	0.80	+2.3
4,490,550	+		PS417_20660	0.82	+2.0
4,490,551	-		PS417_20660	0.82	+2.3
4,490,564	+		PS417_20660	0.84	+2.5
4,490,564	+		PS417_20660	0.84	+2.5
4,490,565	-		PS417_20660	0.85	+2.1
4,490,565	-		PS417_20660	0.85	+2.1
4,490,565	-				+3.9
4,490,565	-		PS417_20660	0.85	+2.6
4,490,618	+				+2.6
4,490,643	-				+2.7
4,490,657	+				+3.3
4,490,657	+				+2.6
4,490,658	-				-2.1
4,490,658	-				+2.0
4,490,676	+				+1.5
4,490,677	-				+3.0
4,490,697	-				+2.9
4,490,706	+				+2.6
4,490,706	+				+2.7
4,490,706	+				+1.4
4,490,707	-				+1.2
4,490,707	-				+3.1
4,490,707	-				+2.0
4,490,707	-				+1.5
4,490,707	-				+2.9
4,490,752	+				+3.0
4,490,753	-				+0.1
4,490,753	-				+0.1
4,490,753	-				+1.0
4,490,753	-				+0.1
4,490,767	+				+2.7
4,490,767	+				+1.8
4,490,817	+				+2.4
4,490,848	-				-0.0
4,490,851	+				+2.4
4,490,852	-				+1.4
4,491,102	+		PS417_20665	0.20	+2.8
4,491,103	-		PS417_20665	0.20	+2.8
4,491,104	+		PS417_20665	0.20	+3.4
4,491,152	+		PS417_20665	0.23	+1.4
4,491,152	+		PS417_20665	0.23	+2.1
4,491,152	+		PS417_20665	0.23	+2.6
4,491,153	-		PS417_20665	0.23	+3.7
4,491,154	+		PS417_20665	0.23	+2.8
4,491,154	+		PS417_20665	0.23	+2.4
4,491,155	-		PS417_20665	0.23	+3.0
4,491,254	+		PS417_20665	0.29	+2.6
4,491,258	+				+3.1
4,491,259	-		PS417_20665	0.29	+3.6
4,491,259	-		PS417_20665	0.29	+2.5
4,491,322	-		PS417_20665	0.33	+3.5
4,491,489	-		PS417_20665	0.42	+3.9
4,491,613	+		PS417_20665	0.50	+4.2
4,491,624	+		PS417_20665	0.50	+4.4
4,491,745	+		PS417_20665	0.57	+3.4
4,491,759	+		PS417_20665	0.58	+3.5
4,492,351	+				+2.1
4,492,483	-				+1.2
4,492,521	+				+3.8
4,492,537	-				+0.1
4,492,540	+				+3.8
4,492,541	-				+0.5
4,492,541	-				-0.7
4,492,541	-				+1.1
4,492,562	-				+0.5
4,492,562	-				-0.1
4,492,672	+				+0.3
4,492,672	+				+2.7
4,492,672	+				+3.0
4,492,672	+				+2.5
4,492,673	-				+2.8
4,492,673	-				+2.7
4,492,673	-				+2.6
4,492,898	+		PS417_20670	0.25	+2.2
4,492,899	-		PS417_20670	0.25	+2.8
4,492,921	+		PS417_20670	0.27	+2.0
4,492,921	+		PS417_20670	0.27	+2.3
4,492,921	+		PS417_20670	0.27	+2.6
4,492,922	-		PS417_20670	0.27	+2.3
4,492,922	-		PS417_20670	0.27	+3.2
4,492,922	-		PS417_20670	0.27	+1.4
4,492,924	+		PS417_20670	0.28	+3.0
4,492,925	-		PS417_20670	0.28	+2.8
4,492,977	+		PS417_20670	0.33	+2.7
4,492,977	+		PS417_20670	0.33	+2.3
4,493,014	-		PS417_20670	0.37	+2.9
4,493,113	+		PS417_20670	0.47	+2.8
4,493,203	+		PS417_20670	0.56	+2.4
4,493,335	-		PS417_20670	0.70	+2.7
4,493,384	+		PS417_20670	0.75	+2.4
4,493,418	+		PS417_20670	0.78	+3.8