Strain Fitness in Pseudomonas simiae WCS417 around PS417_20655

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
4,488,221	+				+5.3
4,488,221	+		PS417_20650	0.34	+1.8
4,488,233	-		PS417_20650	0.35	+4.2
4,488,266	+		PS417_20650	0.38	+4.2
4,488,325	+		PS417_20650	0.42	+4.6
4,488,325	+		PS417_20650	0.42	+4.1
4,488,366	+				+2.1
4,488,378	-		PS417_20650	0.46	+4.2
4,488,378	-		PS417_20650	0.46	+4.4
4,488,393	-		PS417_20650	0.48	+4.1
4,488,520	+		PS417_20650	0.58	+4.1
4,488,521	-				+2.5
4,488,558	-		PS417_20650	0.61	+4.1
4,488,561	+				+4.1
4,488,562	-		PS417_20650	0.61	+4.8
4,488,596	+		PS417_20650	0.64	+4.2
4,488,598	+		PS417_20650	0.64	+4.7
4,488,599	-		PS417_20650	0.64	+3.9
4,488,599	-		PS417_20650	0.64	+4.2
4,488,635	+		PS417_20650	0.67	+4.3
4,488,702	-		PS417_20650	0.72	+4.0
4,488,735	+		PS417_20650	0.74	+4.0
4,488,754	+		PS417_20650	0.76	+2.9
4,488,754	+		PS417_20650	0.76	+4.3
4,488,755	-		PS417_20650	0.76	+4.2
4,488,755	-		PS417_20650	0.76	+5.0
4,488,755	-		PS417_20650	0.76	+3.8
4,488,822	+		PS417_20650	0.81	+4.2
4,488,823	-		PS417_20650	0.81	+3.8
4,488,828	+		PS417_20650	0.82	+4.9
4,488,994	-				+4.0
4,489,019	-				+4.2
4,489,023	-				+3.4
4,489,023	-				+4.2
4,489,072	+				+3.8
4,489,076	+				+3.7
4,489,077	-				-0.6
4,489,149	+				+3.1
4,489,226	+		PS417_20655	0.16	+2.7
4,489,226	+		PS417_20655	0.16	+3.4
4,489,227	-		PS417_20655	0.16	+2.6
4,489,329	+		PS417_20655	0.26	+3.3
4,489,476	-		PS417_20655	0.39	+2.7
4,489,495	-		PS417_20655	0.41	+3.4
4,489,542	+		PS417_20655	0.46	+2.9
4,489,543	-		PS417_20655	0.46	+1.7
4,489,543	-		PS417_20655	0.46	+2.6
4,489,543	-		PS417_20655	0.46	+2.3
4,489,595	+		PS417_20655	0.51	+2.5
4,489,600	+		PS417_20655	0.51	+2.6
4,489,601	-		PS417_20655	0.51	+2.4
4,489,601	-		PS417_20655	0.51	+2.7
4,489,673	+		PS417_20655	0.58	+1.8
4,489,673	+		PS417_20655	0.58	+3.0
4,489,754	+		PS417_20655	0.65	+2.7
4,489,765	-		PS417_20655	0.66	+2.3
4,489,812	+		PS417_20655	0.71	+2.4
4,489,812	+		PS417_20655	0.71	+1.8
4,489,820	+		PS417_20655	0.72	+2.4
4,489,820	+		PS417_20655	0.72	+2.1
4,489,820	+		PS417_20655	0.72	+4.2
4,489,821	-		PS417_20655	0.72	+1.9
4,489,821	-		PS417_20655	0.72	+2.6
4,489,821	-		PS417_20655	0.72	+2.5
4,489,876	+		PS417_20655	0.77	+2.5
4,489,877	-		PS417_20655	0.77	+2.6
4,489,986	+		PS417_20655	0.87	+2.8
4,489,986	+		PS417_20655	0.87	+3.1
4,489,986	+		PS417_20655	0.87	+2.0
4,489,987	-		PS417_20655	0.87	+3.8
4,490,051	+				+3.6
4,490,248	+		PS417_20660	0.24	+2.3
4,490,290	-		PS417_20660	0.32	+1.7
4,490,312	-		PS417_20660	0.36	+2.8
4,490,312	-		PS417_20660	0.36	+2.9
4,490,431	+		PS417_20660	0.59	+2.4
4,490,432	-		PS417_20660	0.59	+3.4
4,490,432	-		PS417_20660	0.59	+2.5
4,490,432	-		PS417_20660	0.59	+2.5
4,490,434	-		PS417_20660	0.59	+1.4
4,490,504	+		PS417_20660	0.73	+2.4
4,490,505	-		PS417_20660	0.73	+1.4
4,490,543	-		PS417_20660	0.80	+2.3
4,490,550	+		PS417_20660	0.82	+2.0
4,490,551	-		PS417_20660	0.82	+2.3
4,490,564	+		PS417_20660	0.84	+2.5
4,490,564	+		PS417_20660	0.84	+2.5
4,490,565	-		PS417_20660	0.85	+2.1
4,490,565	-		PS417_20660	0.85	+2.1
4,490,565	-				+3.9
4,490,565	-		PS417_20660	0.85	+2.6
4,490,618	+				+2.6
4,490,643	-				+2.7
4,490,657	+				+3.3
4,490,657	+				+2.6
4,490,658	-				-2.1
4,490,658	-				+2.0
4,490,676	+				+1.5
4,490,677	-				+3.0
4,490,697	-				+2.9
4,490,706	+				+2.6
4,490,706	+				+2.7
4,490,706	+				+1.4
4,490,707	-				+1.2
4,490,707	-				+3.1
4,490,707	-				+2.0
4,490,707	-				+1.5
4,490,707	-				+2.9
4,490,752	+				+3.0
4,490,753	-				+0.1
4,490,753	-				+0.1
4,490,753	-				+1.0
4,490,753	-				+0.1
4,490,767	+				+2.7
4,490,767	+				+1.8
4,490,817	+				+2.4
4,490,848	-				-0.0
4,490,851	+				+2.4
4,490,852	-				+1.4
4,491,102	+		PS417_20665	0.20	+2.8
4,491,103	-		PS417_20665	0.20	+2.8
4,491,104	+		PS417_20665	0.20	+3.4