Strain Fitness in Pseudomonas simiae WCS417 around PS417_20365

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
4,418,083	+		PS417_20360	0.16	-1.4
4,418,083	+		PS417_20360	0.16	-0.2
4,418,083	+		PS417_20360	0.16	+0.5
4,418,129	+		PS417_20360	0.23	-0.2
4,418,129	+				+0.3
4,418,269	-		PS417_20360	0.42	+0.8
4,418,298	-		PS417_20360	0.46	+0.1
4,418,311	-		PS417_20360	0.48	+0.2
4,418,318	+		PS417_20360	0.48	-2.0
4,418,319	-		PS417_20360	0.49	-0.8
4,418,319	-		PS417_20360	0.49	-1.4
4,418,514	-		PS417_20360	0.75	+0.0
4,418,537	+		PS417_20360	0.78	+1.8
4,418,537	+		PS417_20360	0.78	-0.6
4,418,537	+		PS417_20360	0.78	+0.0
4,418,538	-		PS417_20360	0.79	-0.4
4,418,538	-		PS417_20360	0.79	-1.5
4,418,538	-		PS417_20360	0.79	+0.2
4,418,679	-				+1.0
4,418,679	-				-0.1
4,418,758	-				-0.3
4,418,899	+				-0.3
4,418,930	+				-0.2
4,418,930	+				-1.2
4,418,930	+				-0.1
4,418,930	+				-0.1
4,418,931	-				-0.4
4,418,931	-				-0.1
4,418,992	+				+0.8
4,418,993	-				-0.1
4,418,993	-				+0.1
4,418,993	-				-0.8
4,418,993	-				-0.5
4,419,008	+				+0.1
4,419,009	-				+0.3
4,419,058	-				-0.1
4,419,058	-				+0.1
4,419,058	-				-0.3
4,419,058	-				-1.5
4,419,058	-				+0.5
4,419,102	-		PS417_20365	0.17	-1.0
4,419,196	+		PS417_20365	0.39	-0.1
4,419,196	+		PS417_20365	0.39	-1.1
4,419,197	-		PS417_20365	0.40	-1.5
4,419,209	+				-0.5
4,419,320	-		PS417_20365	0.69	-0.5
4,419,415	+				-0.2
4,419,416	-				-1.9
4,419,486	+				+0.7
4,419,546	+		PS417_20370	0.13	+0.3
4,419,639	+		PS417_20370	0.27	-0.2
4,419,668	-		PS417_20370	0.32	-0.6
4,419,725	+		PS417_20370	0.40	+0.4
4,419,725	+		PS417_20370	0.40	-1.7
4,419,726	-		PS417_20370	0.40	-2.2
4,419,726	-		PS417_20370	0.40	+0.8
4,419,726	-		PS417_20370	0.40	+0.3
4,419,726	-		PS417_20370	0.40	-0.7
4,419,726	-		PS417_20370	0.40	-1.1
4,419,726	-		PS417_20370	0.40	-0.6
4,419,779	+		PS417_20370	0.49	-0.1
4,419,829	+		PS417_20370	0.56	+0.3
4,419,830	-		PS417_20370	0.56	-0.2
4,419,833	-		PS417_20370	0.57	-0.1
4,419,833	-		PS417_20370	0.57	-0.9
4,419,860	+		PS417_20370	0.61	-0.9
4,419,861	-		PS417_20370	0.61	-0.3
4,419,861	-		PS417_20370	0.61	+0.2
4,419,861	-		PS417_20370	0.61	-0.6
4,419,861	-		PS417_20370	0.61	-0.4
4,420,117	-				-0.1
4,420,158	+				-0.5
4,420,159	-				-0.2
4,420,175	+				+0.7
4,420,175	+				+0.4
4,420,175	+				-0.1
4,420,176	-				-0.0
4,420,176	-				+0.6
4,420,178	+				-0.0
4,420,178	+				-0.1
4,420,200	+				-0.7
4,420,201	-				-0.3
4,420,201	-				-0.2
4,420,277	+				-0.9
4,420,277	+				-0.9
4,420,277	+				+0.1
4,420,277	+				-1.5
4,420,278	-				-1.4
4,420,435	+				-0.7
4,420,436	-				+0.1
4,420,436	-				+0.2
4,420,438	+				-1.5
4,420,439	-				+0.5
4,420,439	-				-1.5
4,420,439	-				+0.1