Experiment: Neomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01960 and PS417_01965 overlap by 4 nucleotides PS417_01965 and PS417_01970 overlap by 4 nucleotides PS417_01970 and PS417_01975 are separated by 69 nucleotides
PS417_01960: PS417_01960 - pilus assembly protein, at 436,193 to 436,846
_01960
PS417_01965: PS417_01965 - fimbriae biosynthesis protein, at 436,843 to 437,397
_01965
PS417_01970: PS417_01970 - pilus assembly protein, at 437,394 to 438,353
_01970
PS417_01975: PS417_01975 - pilus assembly protein PilQ, at 438,423 to 439,748
_01975
Position (kb) 437
438
439 Strain fitness (log2 ratio) -1
0
1
2 at 436.536 kb on - strand, within PS417_01960 at 436.536 kb on - strand, within PS417_01960 at 436.617 kb on + strand, within PS417_01960 at 436.617 kb on + strand, within PS417_01960 at 436.618 kb on - strand at 436.618 kb on - strand, within PS417_01960 at 436.862 kb on + strand at 436.862 kb on + strand at 436.863 kb on - strand at 436.903 kb on + strand, within PS417_01965 at 436.907 kb on + strand, within PS417_01965 at 436.907 kb on + strand, within PS417_01965 at 437.453 kb on - strand at 437.517 kb on + strand, within PS417_01970 at 437.517 kb on + strand, within PS417_01970 at 437.518 kb on - strand, within PS417_01970 at 437.950 kb on - strand, within PS417_01970 at 437.980 kb on + strand, within PS417_01970 at 438.181 kb on + strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.338 kb on - strand at 438.448 kb on + strand at 438.479 kb on + strand at 438.495 kb on + strand at 438.496 kb on - strand at 438.816 kb on + strand, within PS417_01975 at 438.816 kb on + strand, within PS417_01975 at 438.816 kb on + strand, within PS417_01975 at 439.209 kb on + strand, within PS417_01975 at 439.210 kb on - strand, within PS417_01975
Per-strain Table
Position Strand Gene LocusTag Fraction Neomycin 0.04 mg/ml remove 436,536 - PS417_01960 0.52 -0.2 436,536 - PS417_01960 0.52 -0.8 436,617 + PS417_01960 0.65 -0.6 436,617 + PS417_01960 0.65 +0.4 436,618 - +1.8 436,618 - PS417_01960 0.65 -0.3 436,862 + +0.8 436,862 + +0.1 436,863 - -1.3 436,903 + PS417_01965 0.11 +0.4 436,907 + PS417_01965 0.12 +0.9 436,907 + PS417_01965 0.12 +0.6 437,453 - +0.9 437,517 + PS417_01970 0.13 +0.4 437,517 + PS417_01970 0.13 +1.5 437,518 - PS417_01970 0.13 +0.1 437,950 - PS417_01970 0.58 -0.0 437,980 + PS417_01970 0.61 +1.2 438,181 + PS417_01970 0.82 +1.6 438,182 - PS417_01970 0.82 +0.7 438,182 - PS417_01970 0.82 -0.2 438,338 - +0.8 438,448 + +0.3 438,479 + -0.1 438,495 + +0.3 438,496 - +0.6 438,816 + PS417_01975 0.30 +0.0 438,816 + PS417_01975 0.30 +0.2 438,816 + PS417_01975 0.30 +0.0 439,209 + PS417_01975 0.59 +0.3 439,210 - PS417_01975 0.59 +0.8
Or see this region's nucleotide sequence