Strain Fitness in Pseudomonas simiae WCS417 around PS417_19445

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
4,216,679	+				-0.3
4,216,679	+				-0.2
4,216,783	-				+0.2
4,216,783	-				-0.9
4,216,863	+				-0.2
4,216,863	+				-0.2
4,216,863	+				+0.3
4,216,864	-				+0.1
4,216,966	+				+0.4
4,216,975	+				-0.2
4,216,975	+				+0.3
4,216,976	-				+0.2
4,217,039	-				-0.3
4,217,061	-				-1.8
4,217,086	+				-0.5
4,217,087	-				+0.1
4,217,180	+		PS417_19445	0.13	+0.4
4,217,180	+		PS417_19445	0.13	-0.6
4,217,181	-		PS417_19445	0.13	+0.5
4,217,181	-		PS417_19445	0.13	+1.3
4,217,181	-		PS417_19445	0.13	+1.1
4,217,181	-		PS417_19445	0.13	+0.2
4,217,333	+		PS417_19445	0.32	-0.1
4,217,333	+		PS417_19445	0.32	-0.1
4,217,334	-		PS417_19445	0.33	-0.5
4,217,336	+		PS417_19445	0.33	-0.2
4,217,337	-		PS417_19445	0.33	+2.4
4,217,429	+		PS417_19445	0.45	+0.4
4,217,429	+		PS417_19445	0.45	+0.9
4,217,429	+		PS417_19445	0.45	-0.1
4,217,429	+		PS417_19445	0.45	-0.3
4,217,430	-		PS417_19445	0.45	+0.1
4,217,460	-		PS417_19445	0.49	+0.5
4,217,505	-		PS417_19445	0.54	+0.1
4,217,523	-		PS417_19445	0.57	+0.2
4,217,676	-		PS417_19445	0.76	+0.3
4,217,711	+		PS417_19445	0.81	+0.6
4,217,711	+		PS417_19445	0.81	+0.3
4,217,753	+		PS417_19445	0.86	+0.1
4,217,753	+				+2.1
4,217,753	+		PS417_19445	0.86	+0.1
4,217,753	+		PS417_19445	0.86	+1.2
4,217,753	+		PS417_19445	0.86	+1.1
4,217,754	-		PS417_19445	0.86	-0.3
4,217,754	-		PS417_19445	0.86	-0.1
4,217,769	-		PS417_19445	0.88	+0.6
4,217,821	+				+0.0
4,217,853	-				+1.3
4,217,853	-				+0.2
4,218,007	+				-0.1
4,218,242	+		PS417_19450	0.31	-0.4
4,218,242	+		PS417_19450	0.31	+0.9
4,218,242	+		PS417_19450	0.31	-0.4
4,218,243	-		PS417_19450	0.31	-0.0
4,218,284	-		PS417_19450	0.34	+0.2
4,218,284	-		PS417_19450	0.34	-0.3
4,218,284	-		PS417_19450	0.34	+0.5
4,218,825	+		PS417_19450	0.82	+1.5
4,218,825	+		PS417_19450	0.82	+1.2
4,218,825	+		PS417_19450	0.82	+1.0