Strain Fitness in Pseudomonas simiae WCS417 around PS417_18365

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
3,999,023	-				+0.6
3,999,046	-				+0.5
3,999,056	-				-0.0
3,999,117	+				+0.1
3,999,118	-				+0.7
3,999,170	-				+0.6
3,999,175	-				+0.6
3,999,175	-				+0.5
3,999,221	+				+0.4
3,999,221	+				-1.2
3,999,221	+				+0.5
3,999,222	-				+0.2
3,999,222	-				+0.9
3,999,223	+				+0.7
3,999,223	+				+1.1
3,999,224	-				+0.3
3,999,224	-				+0.5
3,999,238	+				+0.1
3,999,238	+				+0.8
3,999,238	+				+0.7
3,999,238	+				+0.6
3,999,238	+				-1.2
3,999,239	-				+0.9
3,999,239	-				+1.0
3,999,249	+				-0.9
3,999,250	-				+0.9
3,999,271	-		PS417_18355	0.13	+0.4
3,999,271	-		PS417_18355	0.13	+0.7
3,999,338	+		PS417_18355	0.44	+0.7
3,999,338	+		PS417_18355	0.44	+0.6
3,999,338	+		PS417_18355	0.44	+0.9
3,999,339	-		PS417_18355	0.45	+2.1
3,999,339	-		PS417_18355	0.45	+0.8
3,999,339	-		PS417_18355	0.45	+0.6
3,999,454	+				+0.5
3,999,454	+				+0.2
3,999,470	+				-0.2
3,999,562	+		PS417_18360	0.10	-0.3
3,999,597	+		PS417_18360	0.21	+0.4
3,999,598	-		PS417_18360	0.21	-0.1
3,999,614	-		PS417_18360	0.26	+0.2
3,999,857	+				-0.5
3,999,857	+				+1.3
3,999,857	+				+1.8
3,999,857	+				-0.1
3,999,858	-				-0.1
3,999,916	+				-0.3
3,999,917	-				+0.2
3,999,981	+				-0.0
3,999,981	+				+0.6
3,999,982	-				+0.5
4,000,090	+		PS417_18365	0.32	+0.4
4,000,090	+		PS417_18365	0.32	+0.7
4,000,090	+		PS417_18365	0.32	-0.1
4,000,090	+		PS417_18365	0.32	-0.6
4,000,090	+		PS417_18365	0.32	+0.4
4,000,090	+		PS417_18365	0.32	+1.1
4,000,091	-		PS417_18365	0.32	+0.6
4,000,091	-		PS417_18365	0.32	+1.0
4,000,091	-				+2.6
4,000,094	+				+1.0
4,000,095	-		PS417_18365	0.33	+0.4
4,000,095	-		PS417_18365	0.33	+0.0
4,000,095	-		PS417_18365	0.33	+2.0
4,000,095	-		PS417_18365	0.33	+0.4
4,000,095	-		PS417_18365	0.33	+1.3
4,000,099	-		PS417_18365	0.35	+0.7
4,000,160	+		PS417_18365	0.54	+1.2
4,000,180	+		PS417_18365	0.61	-0.3
4,000,181	-		PS417_18365	0.61	-0.4
4,000,182	+		PS417_18365	0.61	+0.0
4,000,182	+		PS417_18365	0.61	+1.8
4,000,183	-		PS417_18365	0.62	-0.1
4,000,217	-		PS417_18365	0.73	+0.3
4,000,373	+				-0.2
4,000,374	-				-0.6
4,000,374	-				+0.2
4,000,377	+				-0.2
4,000,378	-				+0.2
4,000,378	-				-0.4
4,000,531	+		PS417_18370	0.28	+1.6
4,000,532	-		PS417_18370	0.29	+1.2
4,000,629	-		PS417_18370	0.74	+0.4
4,000,681	+				-0.7
4,000,681	+				-0.0
4,000,861	-		PS417_18375	0.14	+0.1
4,000,872	+		PS417_18375	0.15	-1.1
4,000,982	+		PS417_18375	0.26	-1.5
4,000,983	-		PS417_18375	0.26	-1.0
4,000,983	-		PS417_18375	0.26	-0.3
4,001,066	-		PS417_18375	0.34	-0.1
4,001,093	+				+1.6
4,001,094	-		PS417_18375	0.37	-1.6
4,001,094	-		PS417_18375	0.37	+0.7
4,001,094	-		PS417_18375	0.37	+0.9
4,001,298	+		PS417_18375	0.56	+0.2
4,001,299	-		PS417_18375	0.57	-0.3