Strain Fitness in Pseudomonas simiae WCS417 around PS417_17170

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
3,748,782	+		PS417_17165	0.63	+0.0
3,748,881	+		PS417_17165	0.68	+0.7
3,748,881	+		PS417_17165	0.68	+0.6
3,748,882	-		PS417_17165	0.68	-0.4
3,748,959	+		PS417_17165	0.72	+0.4
3,749,018	+		PS417_17165	0.75	+0.3
3,749,052	-		PS417_17165	0.77	+0.4
3,749,312	+				+0.3
3,749,312	+		PS417_17165	0.89	+0.8
3,749,313	-		PS417_17165	0.90	-0.0
3,749,313	-		PS417_17165	0.90	-0.4
3,749,313	-		PS417_17165	0.90	-0.4
3,749,588	+				+1.7
3,749,589	-				-0.4
3,749,602	+				+0.3
3,749,602	+				+0.3
3,749,645	+				+0.7
3,749,646	-				-0.1
3,749,700	+				-0.5
3,749,701	-				-2.4
3,749,834	+				-2.0
3,749,834	+				-2.5
3,749,834	+				-2.3
3,749,834	+				-2.0
3,749,851	+				-2.5
3,749,851	+				-1.6
3,750,080	+		PS417_17170	0.30	-2.3
3,750,081	-		PS417_17170	0.30	-0.7
3,750,192	-		PS417_17170	0.40	-1.4
3,750,192	-		PS417_17170	0.40	-1.7
3,750,227	+		PS417_17170	0.43	-1.8
3,750,347	+		PS417_17170	0.54	-1.5
3,750,347	+		PS417_17170	0.54	-1.8
3,750,347	+		PS417_17170	0.54	-1.5
3,750,347	+		PS417_17170	0.54	-1.7
3,750,347	+		PS417_17170	0.54	-2.9
3,750,347	+		PS417_17170	0.54	-2.0
3,750,348	-		PS417_17170	0.54	-2.3
3,750,348	-		PS417_17170	0.54	-0.6
3,750,348	-				+0.9
3,750,350	-		PS417_17170	0.54	-1.7
3,750,419	+		PS417_17170	0.60	-1.0
3,750,420	-		PS417_17170	0.60	-3.6
3,750,436	+		PS417_17170	0.61	-1.8
3,750,498	+		PS417_17170	0.67	-3.9
3,750,498	+		PS417_17170	0.67	-2.5
3,750,499	-		PS417_17170	0.67	-0.7
3,750,700	+		PS417_17170	0.85	-2.5
3,750,701	-		PS417_17170	0.85	-1.9
3,750,859	+				-2.1
3,751,285	+		PS417_17175	0.41	-0.3
3,751,286	-		PS417_17175	0.41	+0.5
3,751,399	+				+2.2
3,751,526	+		PS417_17175	0.64	+1.1
3,751,527	-		PS417_17175	0.64	+1.0
3,751,527	-		PS417_17175	0.64	-0.1
3,751,753	+		PS417_17175	0.86	+0.6
3,751,753	+		PS417_17175	0.86	+0.6
3,751,792	+		PS417_17175	0.90	-0.1
3,751,792	+		PS417_17175	0.90	-0.6
3,751,792	+		PS417_17175	0.90	+0.8