Strain Fitness in Pseudomonas simiae WCS417 around PS417_16400

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
3,586,174	+				+0.1
3,586,175	-				-0.7
3,586,175	-				+1.1
3,586,176	+				-0.4
3,586,176	+				-0.4
3,586,176	+				+1.1
3,586,177	-				+0.9
3,586,309	+		PS417_16390	0.15	-1.0
3,586,309	+		PS417_16390	0.15	-0.9
3,586,310	-		PS417_16390	0.15	-0.4
3,586,334	+		PS417_16390	0.20	-0.8
3,586,334	+		PS417_16390	0.20	-1.5
3,586,334	+		PS417_16390	0.20	-0.7
3,586,334	+		PS417_16390	0.20	-1.3
3,586,335	-		PS417_16390	0.21	-0.3
3,586,335	-		PS417_16390	0.21	-0.4
3,586,480	+		PS417_16390	0.52	-1.2
3,586,562	+		PS417_16390	0.70	-1.1
3,586,604	-		PS417_16390	0.79	-0.3
3,586,741	-				+0.9
3,586,784	+				-0.3
3,586,784	+				-1.0
3,586,784	+				-0.8
3,586,785	-				-1.1
3,586,796	+				+0.2
3,586,992	+		PS417_16395	0.49	+3.1
3,587,012	+		PS417_16395	0.55	+1.0
3,587,012	+		PS417_16395	0.55	+0.3
3,587,012	+		PS417_16395	0.55	-0.3
3,587,179	+				+0.1
3,587,179	+				+0.2
3,587,180	-				+0.8
3,587,195	-				-0.2
3,587,347	+		PS417_16400	0.29	-0.7
3,587,347	+		PS417_16400	0.29	-0.1
3,587,435	-		PS417_16400	0.44	-1.4
3,587,779	+				-0.0
3,587,880	-		PS417_16405	0.28	-0.2
3,587,880	-		PS417_16405	0.28	-0.2
3,587,880	-		PS417_16405	0.28	-0.3
3,587,880	-		PS417_16405	0.28	-0.4
3,587,882	+		PS417_16405	0.28	-0.2
3,587,882	+		PS417_16405	0.28	+0.3
3,587,882	+		PS417_16405	0.28	-1.6
3,588,023	+		PS417_16405	0.62	-0.6
3,588,051	-		PS417_16405	0.69	+0.1
3,588,079	-		PS417_16405	0.75	-0.1
3,588,125	+		PS417_16405	0.86	+0.1
3,588,125	+		PS417_16405	0.86	-0.2
3,588,126	-		PS417_16405	0.87	-0.3
3,588,126	-		PS417_16405	0.87	-0.2
3,588,285	-				-0.3
3,588,285	-				-0.1
3,588,286	+				-0.9