Strain Fitness in Pseudomonas simiae WCS417 around PS417_14015

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
3,078,057	-				+0.1
3,078,057	-				-0.3
3,078,166	+		PS417_14010	0.17	-0.5
3,078,166	+		PS417_14010	0.17	+0.5
3,078,206	+		PS417_14010	0.21	+1.2
3,078,206	+		PS417_14010	0.21	+1.3
3,078,206	+		PS417_14010	0.21	+0.2
3,078,416	+		PS417_14010	0.44	-0.3
3,078,416	+		PS417_14010	0.44	+1.2
3,078,416	+		PS417_14010	0.44	+1.1
3,078,416	+		PS417_14010	0.44	+0.5
3,078,416	+		PS417_14010	0.44	-0.1
3,078,417	-		PS417_14010	0.44	-0.1
3,078,451	+		PS417_14010	0.48	-0.6
3,078,451	+		PS417_14010	0.48	+0.6
3,078,451	+		PS417_14010	0.48	+0.0
3,078,452	-		PS417_14010	0.48	-0.2
3,078,724	+		PS417_14010	0.77	+0.5
3,078,724	+		PS417_14010	0.77	+0.5
3,078,725	-		PS417_14010	0.77	+0.4
3,078,725	-		PS417_14010	0.77	+0.6
3,078,725	-		PS417_14010	0.77	+0.5
3,078,904	-				+1.0
3,078,905	+				+0.8
3,078,905	+				+1.2
3,078,905	+				-1.9
3,078,905	+				+0.8
3,078,906	-				+0.7
3,078,906	-				+0.8
3,078,906	-				+0.8
3,078,906	-				+0.8
3,078,906	-				+0.3
3,079,226	-		PS417_14015	0.25	+0.8
3,079,711	+		PS417_14015	0.80	+0.9
3,079,712	-		PS417_14015	0.81	+0.6
3,079,763	-		PS417_14015	0.86	+0.7
3,079,771	+		PS417_14015	0.87	+1.4
3,079,772	-		PS417_14015	0.87	+0.8
3,079,856	+				+0.2
3,079,888	+				+0.2
3,079,888	+				+0.4
3,079,907	+				+0.9
3,079,918	+				+0.0
3,079,937	-				+0.4
3,080,095	+				+1.3
3,080,095	+				+0.1
3,080,096	-				+1.3
3,080,096	-				+1.0
3,080,300	+		PS417_14020	0.21	+0.1
3,080,327	+				-0.8
3,080,328	-		PS417_14020	0.23	+2.2
3,080,328	-		PS417_14020	0.23	+2.6
3,080,328	-		PS417_14020	0.23	+1.7
3,080,354	+		PS417_14020	0.24	+0.3
3,080,355	-		PS417_14020	0.24	+0.2
3,080,371	-		PS417_14020	0.25	+0.8
3,080,502	+		PS417_14020	0.34	+0.1
3,080,502	+		PS417_14020	0.34	+0.3
3,080,503	-		PS417_14020	0.34	+0.7
3,080,503	-		PS417_14020	0.34	+1.8
3,080,503	-				+1.3
3,080,503	-		PS417_14020	0.34	+1.1
3,080,503	-		PS417_14020	0.34	+1.3
3,080,505	-		PS417_14020	0.34	+0.8
3,080,580	+		PS417_14020	0.39	+0.2
3,080,625	-		PS417_14020	0.42	+0.3
3,080,625	-		PS417_14020	0.42	+1.1
3,080,666	+		PS417_14020	0.45	-0.9