Strain Fitness in Pseudomonas simiae WCS417 around PS417_12215

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
2,654,407	+		PS417_12210	0.57	+0.1
2,654,408	-		PS417_12210	0.57	-0.1
2,654,408	-		PS417_12210	0.57	-0.1
2,654,408	-		PS417_12210	0.57	+0.3
2,654,408	-		PS417_12210	0.57	-0.5
2,654,414	-		PS417_12210	0.58	-2.0
2,654,936	-		PS417_12210	0.86	-0.2
2,655,108	-				-0.8
2,655,108	-				-0.6
2,655,162	+				-0.8
2,655,162	+				-0.4
2,655,163	-				-0.2
2,655,163	-				-0.3
2,655,163	-				-0.4
2,655,165	+				-0.9
2,655,165	+				-0.6
2,655,169	-				+0.2
2,655,169	-				-2.5
2,655,401	+				-0.5
2,655,401	+				-1.1
2,655,402	-				-0.4
2,655,513	-				-1.0
2,655,539	+				-2.1
2,655,540	-				-0.7
2,655,540	-				-0.9
2,655,716	+		PS417_12215	0.22	-1.1
2,655,716	+		PS417_12215	0.22	-1.9
2,655,717	-		PS417_12215	0.22	-0.7
2,655,726	+		PS417_12215	0.23	+0.4
2,656,028	+		PS417_12215	0.44	-2.3
2,656,080	-		PS417_12215	0.48	-1.4
2,656,185	-		PS417_12215	0.55	-2.8
2,656,289	+		PS417_12215	0.63	-0.2
2,656,289	+		PS417_12215	0.63	-0.8
2,656,289	+		PS417_12215	0.63	-1.8
2,656,346	-		PS417_12215	0.67	-2.1
2,656,370	+		PS417_12215	0.69	-2.5
2,656,385	+		PS417_12215	0.70	-2.5
2,656,458	-		PS417_12215	0.75	-1.4
2,656,458	-		PS417_12215	0.75	-1.6
2,656,587	+		PS417_12215	0.84	+0.7
2,656,894	-				-1.0
2,657,323	+		PS417_12220	0.53	-0.8
2,657,360	+		PS417_12220	0.58	-0.7
2,657,360	+		PS417_12220	0.58	-0.6
2,657,362	+		PS417_12220	0.58	-0.8
2,657,628	+				+0.5
2,657,642	-				-0.3
2,657,642	-				-0.2
2,657,676	+				-0.3
2,657,677	-				-0.4
2,657,677	-				-0.5
2,657,718	+				+0.2
2,657,718	+				-0.2