Strain Fitness in Pseudomonas simiae WCS417 around PS417_07365

Experiment: Neomycin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.04 mg/ml
1,621,540	+		PS417_07360	0.17	-1.9
1,621,540	+		PS417_07360	0.17	+0.1
1,622,020	+		PS417_07360	0.79	+0.4
1,622,021	-		PS417_07360	0.79	-0.6
1,622,021	-		PS417_07360	0.79	-0.2
1,622,048	-		PS417_07360	0.82	-0.6
1,622,048	-		PS417_07360	0.82	-0.6
1,622,221	-				-0.1
1,622,300	-				+1.1
1,622,339	-				+0.4
1,622,460	-				-0.6
1,622,460	-				+0.5
1,622,511	-				-0.0
1,622,514	+				+0.9
1,622,514	+				-0.6
1,622,514	+				-0.6
1,622,514	+				+1.0
1,622,514	+				+0.1
1,622,515	-				+0.8
1,622,668	+		PS417_07365	0.10	-0.6
1,622,668	+		PS417_07365	0.10	-0.2
1,622,968	+		PS417_07365	0.32	+0.5
1,622,968	+		PS417_07365	0.32	+0.6
1,622,969	-		PS417_07365	0.32	-1.2
1,622,969	-		PS417_07365	0.32	+0.5
1,622,969	-		PS417_07365	0.32	-0.3
1,623,178	-		PS417_07365	0.47	-0.3
1,623,230	-		PS417_07365	0.51	+0.3
1,623,496	+				+0.5
1,623,496	+		PS417_07365	0.71	-1.8
1,623,496	+		PS417_07365	0.71	+0.2
1,623,497	-		PS417_07365	0.71	-0.0
1,623,591	+		PS417_07365	0.78	+1.5
1,623,617	-		PS417_07365	0.80	+0.2
1,623,689	+		PS417_07365	0.85	-0.5
1,623,689	+		PS417_07365	0.85	-1.2
1,623,689	+		PS417_07365	0.85	-1.2
1,623,689	+		PS417_07365	0.85	-1.3
1,623,689	+		PS417_07365	0.85	-0.6
1,623,690	-		PS417_07365	0.85	-0.1
1,623,811	+				-0.5
1,623,812	-				+0.4
1,623,880	+				+0.0
1,624,034	+				+0.3
1,624,035	-				+0.3
1,624,035	-				-0.3
1,624,574	+				+0.1
1,624,574	+				+0.2
1,624,575	-				+0.3
1,624,586	-				+0.2
1,624,586	-				-1.1
1,624,596	-				+1.1
1,624,614	+				-0.3
1,624,685	+				-1.1
1,624,685	+				-0.1
1,624,687	+				+0.5
1,624,687	+				+0.4
1,624,688	-				+0.6
1,624,688	-				-0.4
1,624,688	-				-1.9
1,624,688	-				+0.3
1,624,689	+				+0.7
1,624,689	+				+0.4
1,624,689	+				+0.6
1,624,689	+				-0.8
1,624,690	-				-0.0
1,624,690	-				+0.2
1,624,690	-				+0.2
1,624,690	-				+0.2
1,624,690	-				+0.1
1,624,690	-				+0.1
1,624,838	-		PS417_07375	0.10	+0.1
1,624,875	-		PS417_07375	0.14	-0.5