Experiment: m.b. Nickel (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2693 and Echvi_2694 are separated by 278 nucleotides Echvi_2694 and Echvi_2695 are separated by 62 nucleotides
Echvi_2693: Echvi_2693 - catalase/peroxidase HPI, at 3,199,363 to 3,201,624
_2693
Echvi_2694: Echvi_2694 - Beta-xylosidase, at 3,201,903 to 3,203,537
_2694
Echvi_2695: Echvi_2695 - Beta-galactosidase/beta-glucuronidase, at 3,203,600 to 3,206,551
_2695
Position (kb)
3201
3202
3203
3204 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3200.922 kb on + strand, within Echvi_2693 at 3200.957 kb on - strand, within Echvi_2693 at 3201.095 kb on + strand, within Echvi_2693 at 3201.181 kb on + strand, within Echvi_2693 at 3201.181 kb on + strand, within Echvi_2693 at 3201.181 kb on + strand, within Echvi_2693 at 3201.197 kb on - strand, within Echvi_2693 at 3201.198 kb on + strand, within Echvi_2693 at 3201.198 kb on + strand, within Echvi_2693 at 3201.198 kb on + strand, within Echvi_2693 at 3201.198 kb on + strand, within Echvi_2693 at 3201.198 kb on + strand, within Echvi_2693 at 3201.199 kb on - strand, within Echvi_2693 at 3201.199 kb on - strand, within Echvi_2693 at 3201.199 kb on - strand, within Echvi_2693 at 3201.199 kb on - strand, within Echvi_2693 at 3201.239 kb on + strand, within Echvi_2693 at 3201.368 kb on + strand, within Echvi_2693 at 3201.368 kb on + strand, within Echvi_2693 at 3201.368 kb on + strand, within Echvi_2693 at 3201.368 kb on + strand, within Echvi_2693 at 3201.369 kb on - strand, within Echvi_2693 at 3201.369 kb on - strand, within Echvi_2693 at 3201.387 kb on + strand at 3201.461 kb on - strand at 3201.524 kb on + strand at 3201.525 kb on - strand at 3201.525 kb on - strand at 3201.525 kb on - strand at 3201.525 kb on - strand at 3201.525 kb on - strand at 3201.525 kb on - strand at 3201.526 kb on + strand at 3201.526 kb on + strand at 3201.526 kb on + strand at 3201.527 kb on - strand at 3201.527 kb on - strand at 3201.631 kb on - strand at 3201.634 kb on + strand at 3201.635 kb on - strand at 3201.666 kb on - strand at 3201.768 kb on + strand at 3201.775 kb on + strand at 3201.776 kb on - strand at 3201.776 kb on - strand at 3201.789 kb on - strand at 3201.796 kb on - strand at 3201.824 kb on + strand at 3201.882 kb on - strand at 3201.892 kb on + strand at 3201.913 kb on + strand at 3201.943 kb on - strand at 3201.999 kb on + strand at 3202.000 kb on - strand at 3202.000 kb on - strand at 3202.020 kb on + strand at 3202.098 kb on - strand, within Echvi_2694 at 3202.099 kb on + strand, within Echvi_2694 at 3202.100 kb on - strand, within Echvi_2694 at 3202.153 kb on + strand, within Echvi_2694 at 3202.153 kb on + strand, within Echvi_2694 at 3202.177 kb on + strand, within Echvi_2694 at 3202.177 kb on + strand, within Echvi_2694 at 3202.178 kb on - strand, within Echvi_2694 at 3202.178 kb on - strand, within Echvi_2694 at 3202.178 kb on - strand, within Echvi_2694 at 3202.178 kb on - strand, within Echvi_2694 at 3202.275 kb on + strand, within Echvi_2694 at 3202.275 kb on + strand, within Echvi_2694 at 3202.276 kb on - strand, within Echvi_2694 at 3202.329 kb on - strand, within Echvi_2694 at 3202.362 kb on + strand, within Echvi_2694 at 3202.362 kb on + strand, within Echvi_2694 at 3202.363 kb on - strand, within Echvi_2694 at 3202.439 kb on + strand, within Echvi_2694 at 3202.440 kb on - strand, within Echvi_2694 at 3202.549 kb on + strand, within Echvi_2694 at 3202.594 kb on + strand, within Echvi_2694 at 3202.595 kb on - strand, within Echvi_2694 at 3202.613 kb on + strand, within Echvi_2694 at 3202.614 kb on - strand, within Echvi_2694 at 3202.614 kb on - strand, within Echvi_2694 at 3202.614 kb on - strand, within Echvi_2694 at 3202.624 kb on - strand, within Echvi_2694 at 3202.624 kb on - strand, within Echvi_2694 at 3202.661 kb on - strand, within Echvi_2694 at 3202.669 kb on + strand, within Echvi_2694 at 3202.709 kb on - strand, within Echvi_2694 at 3202.766 kb on - strand, within Echvi_2694 at 3202.766 kb on - strand, within Echvi_2694 at 3202.768 kb on - strand, within Echvi_2694 at 3202.790 kb on - strand, within Echvi_2694 at 3202.801 kb on + strand, within Echvi_2694 at 3202.801 kb on + strand, within Echvi_2694 at 3202.801 kb on + strand, within Echvi_2694 at 3202.801 kb on + strand, within Echvi_2694 at 3202.811 kb on + strand, within Echvi_2694 at 3202.811 kb on + strand, within Echvi_2694 at 3202.931 kb on - strand, within Echvi_2694 at 3202.932 kb on + strand, within Echvi_2694 at 3202.932 kb on + strand, within Echvi_2694 at 3202.933 kb on - strand, within Echvi_2694 at 3202.940 kb on - strand, within Echvi_2694 at 3203.024 kb on + strand, within Echvi_2694 at 3203.025 kb on - strand, within Echvi_2694 at 3203.025 kb on - strand, within Echvi_2694 at 3203.070 kb on + strand, within Echvi_2694 at 3203.071 kb on - strand, within Echvi_2694 at 3203.071 kb on - strand, within Echvi_2694 at 3203.078 kb on + strand, within Echvi_2694 at 3203.079 kb on - strand, within Echvi_2694 at 3203.109 kb on + strand, within Echvi_2694 at 3203.118 kb on + strand, within Echvi_2694 at 3203.118 kb on + strand, within Echvi_2694 at 3203.119 kb on - strand, within Echvi_2694 at 3203.119 kb on - strand, within Echvi_2694 at 3203.119 kb on - strand, within Echvi_2694 at 3203.120 kb on + strand, within Echvi_2694 at 3203.120 kb on + strand, within Echvi_2694 at 3203.122 kb on + strand, within Echvi_2694 at 3203.122 kb on + strand, within Echvi_2694 at 3203.122 kb on + strand, within Echvi_2694 at 3203.122 kb on + strand, within Echvi_2694 at 3203.122 kb on + strand, within Echvi_2694 at 3203.122 kb on + strand, within Echvi_2694 at 3203.123 kb on - strand, within Echvi_2694 at 3203.123 kb on - strand, within Echvi_2694 at 3203.123 kb on - strand, within Echvi_2694 at 3203.128 kb on - strand, within Echvi_2694 at 3203.232 kb on - strand, within Echvi_2694 at 3203.232 kb on - strand, within Echvi_2694 at 3203.232 kb on - strand, within Echvi_2694 at 3203.232 kb on - strand, within Echvi_2694 at 3203.232 kb on - strand, within Echvi_2694 at 3203.232 kb on - strand, within Echvi_2694 at 3203.309 kb on - strand, within Echvi_2694 at 3203.435 kb on + strand at 3203.451 kb on + strand at 3203.451 kb on + strand at 3203.492 kb on + strand at 3203.501 kb on + strand at 3203.519 kb on + strand at 3203.590 kb on + strand at 3203.601 kb on + strand at 3203.602 kb on - strand at 3203.611 kb on + strand at 3203.612 kb on - strand at 3203.612 kb on - strand at 3203.692 kb on + strand at 3203.780 kb on + strand at 3203.780 kb on + strand at 3203.781 kb on - strand at 3203.781 kb on - strand at 3203.790 kb on + strand at 3203.856 kb on + strand at 3203.876 kb on - strand at 3204.134 kb on + strand, within Echvi_2695 at 3204.188 kb on + strand, within Echvi_2695 at 3204.188 kb on + strand, within Echvi_2695 at 3204.405 kb on - strand, within Echvi_2695 at 3204.405 kb on - strand, within Echvi_2695 at 3204.416 kb on + strand, within Echvi_2695 at 3204.417 kb on - strand, within Echvi_2695 at 3204.417 kb on - strand, within Echvi_2695 at 3204.417 kb on - strand, within Echvi_2695 at 3204.479 kb on + strand, within Echvi_2695
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM remove 3,200,922 + Echvi_2693 0.69 -0.1 3,200,957 - Echvi_2693 0.70 -0.5 3,201,095 + Echvi_2693 0.77 +0.6 3,201,181 + Echvi_2693 0.80 -0.3 3,201,181 + Echvi_2693 0.80 -1.1 3,201,181 + Echvi_2693 0.80 +0.3 3,201,197 - Echvi_2693 0.81 -0.8 3,201,198 + Echvi_2693 0.81 +0.9 3,201,198 + Echvi_2693 0.81 +0.2 3,201,198 + Echvi_2693 0.81 -2.2 3,201,198 + Echvi_2693 0.81 -2.1 3,201,198 + Echvi_2693 0.81 +0.2 3,201,199 - Echvi_2693 0.81 -0.1 3,201,199 - Echvi_2693 0.81 -0.8 3,201,199 - Echvi_2693 0.81 +0.9 3,201,199 - Echvi_2693 0.81 +0.2 3,201,239 + Echvi_2693 0.83 -0.6 3,201,368 + Echvi_2693 0.89 -0.7 3,201,368 + Echvi_2693 0.89 -0.7 3,201,368 + Echvi_2693 0.89 -0.9 3,201,368 + Echvi_2693 0.89 -0.2 3,201,369 - Echvi_2693 0.89 +0.0 3,201,369 - Echvi_2693 0.89 -0.7 3,201,387 + +1.0 3,201,461 - -1.3 3,201,524 + +0.3 3,201,525 - -0.7 3,201,525 - -0.5 3,201,525 - +0.9 3,201,525 - -1.3 3,201,525 - +1.9 3,201,525 - +0.6 3,201,526 + -0.3 3,201,526 + +0.3 3,201,526 + +0.0 3,201,527 - +1.0 3,201,527 - -2.2 3,201,631 - -1.5 3,201,634 + +1.6 3,201,635 - -0.6 3,201,666 - -1.7 3,201,768 + +0.9 3,201,775 + -0.6 3,201,776 - -2.0 3,201,776 - +0.6 3,201,789 - -2.2 3,201,796 - +1.6 3,201,824 + -1.3 3,201,882 - -0.1 3,201,892 + +0.4 3,201,913 + -0.1 3,201,943 - +1.0 3,201,999 + +2.0 3,202,000 - -0.5 3,202,000 - -0.1 3,202,020 + +0.5 3,202,098 - Echvi_2694 0.12 +0.4 3,202,099 + Echvi_2694 0.12 +0.3 3,202,100 - Echvi_2694 0.12 +0.0 3,202,153 + Echvi_2694 0.15 +1.0 3,202,153 + Echvi_2694 0.15 +1.1 3,202,177 + Echvi_2694 0.17 +0.3 3,202,177 + Echvi_2694 0.17 -0.8 3,202,178 - Echvi_2694 0.17 -0.3 3,202,178 - Echvi_2694 0.17 -1.6 3,202,178 - Echvi_2694 0.17 +0.9 3,202,178 - Echvi_2694 0.17 -0.2 3,202,275 + Echvi_2694 0.23 +0.1 3,202,275 + Echvi_2694 0.23 -1.1 3,202,276 - Echvi_2694 0.23 -1.5 3,202,329 - Echvi_2694 0.26 -0.5 3,202,362 + Echvi_2694 0.28 +0.5 3,202,362 + Echvi_2694 0.28 +0.5 3,202,363 - Echvi_2694 0.28 -1.9 3,202,439 + Echvi_2694 0.33 -0.5 3,202,440 - Echvi_2694 0.33 -1.0 3,202,549 + Echvi_2694 0.40 +0.8 3,202,594 + Echvi_2694 0.42 +1.0 3,202,595 - Echvi_2694 0.42 +0.6 3,202,613 + Echvi_2694 0.43 -0.5 3,202,614 - Echvi_2694 0.43 +0.1 3,202,614 - Echvi_2694 0.43 -1.2 3,202,614 - Echvi_2694 0.43 -1.7 3,202,624 - Echvi_2694 0.44 -2.3 3,202,624 - Echvi_2694 0.44 -0.6 3,202,661 - Echvi_2694 0.46 -1.9 3,202,669 + Echvi_2694 0.47 +0.5 3,202,709 - Echvi_2694 0.49 +0.8 3,202,766 - Echvi_2694 0.53 +0.2 3,202,766 - Echvi_2694 0.53 +0.3 3,202,768 - Echvi_2694 0.53 +0.5 3,202,790 - Echvi_2694 0.54 +0.1 3,202,801 + Echvi_2694 0.55 +0.9 3,202,801 + Echvi_2694 0.55 +1.8 3,202,801 + Echvi_2694 0.55 +0.8 3,202,801 + Echvi_2694 0.55 +1.1 3,202,811 + Echvi_2694 0.56 -0.2 3,202,811 + Echvi_2694 0.56 +0.0 3,202,931 - Echvi_2694 0.63 +1.1 3,202,932 + Echvi_2694 0.63 +0.8 3,202,932 + Echvi_2694 0.63 -1.8 3,202,933 - Echvi_2694 0.63 +0.8 3,202,940 - Echvi_2694 0.63 +0.0 3,203,024 + Echvi_2694 0.69 +0.3 3,203,025 - Echvi_2694 0.69 +0.6 3,203,025 - Echvi_2694 0.69 -0.7 3,203,070 + Echvi_2694 0.71 +0.2 3,203,071 - Echvi_2694 0.71 +0.6 3,203,071 - Echvi_2694 0.71 +0.2 3,203,078 + Echvi_2694 0.72 -1.5 3,203,079 - Echvi_2694 0.72 +2.9 3,203,109 + Echvi_2694 0.74 +0.4 3,203,118 + Echvi_2694 0.74 +0.5 3,203,118 + Echvi_2694 0.74 -0.3 3,203,119 - Echvi_2694 0.74 +0.4 3,203,119 - Echvi_2694 0.74 -1.4 3,203,119 - Echvi_2694 0.74 +0.5 3,203,120 + Echvi_2694 0.74 -1.7 3,203,120 + Echvi_2694 0.74 -2.1 3,203,122 + Echvi_2694 0.75 -0.8 3,203,122 + Echvi_2694 0.75 +0.2 3,203,122 + Echvi_2694 0.75 -0.4 3,203,122 + Echvi_2694 0.75 -0.3 3,203,122 + Echvi_2694 0.75 -0.8 3,203,122 + Echvi_2694 0.75 +0.6 3,203,123 - Echvi_2694 0.75 +1.3 3,203,123 - Echvi_2694 0.75 -1.4 3,203,123 - Echvi_2694 0.75 -2.1 3,203,128 - Echvi_2694 0.75 +0.9 3,203,232 - Echvi_2694 0.81 +1.8 3,203,232 - Echvi_2694 0.81 +0.6 3,203,232 - Echvi_2694 0.81 -0.0 3,203,232 - Echvi_2694 0.81 +0.3 3,203,232 - Echvi_2694 0.81 -0.8 3,203,232 - Echvi_2694 0.81 -1.1 3,203,309 - Echvi_2694 0.86 -0.6 3,203,435 + +1.0 3,203,451 + +0.5 3,203,451 + -0.4 3,203,492 + -0.0 3,203,501 + -2.5 3,203,519 + -2.1 3,203,590 + +0.3 3,203,601 + -0.1 3,203,602 - +0.2 3,203,611 + -0.6 3,203,612 - -0.3 3,203,612 - -0.5 3,203,692 + -0.6 3,203,780 + +0.7 3,203,780 + -0.6 3,203,781 - -1.1 3,203,781 - +2.5 3,203,790 + +0.2 3,203,856 + +0.6 3,203,876 - -2.1 3,204,134 + Echvi_2695 0.18 +1.1 3,204,188 + Echvi_2695 0.20 -0.7 3,204,188 + Echvi_2695 0.20 +0.3 3,204,405 - Echvi_2695 0.27 -0.2 3,204,405 - Echvi_2695 0.27 -0.8 3,204,416 + Echvi_2695 0.28 -0.2 3,204,417 - Echvi_2695 0.28 -1.0 3,204,417 - Echvi_2695 0.28 -0.6 3,204,417 - Echvi_2695 0.28 +0.2 3,204,479 + Echvi_2695 0.30 +1.8
Or see this region's nucleotide sequence