Experiment: m.b. Nickel (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1741 and Echvi_1742 overlap by 4 nucleotides Echvi_1742 and Echvi_1743 overlap by 4 nucleotides Echvi_1743 and Echvi_1744 overlap by 1 nucleotides Echvi_1744 and Echvi_1745 are separated by 1 nucleotides
Echvi_1741: Echvi_1741 - DNA polymerase III, gamma/tau subunits, at 2,051,494 to 2,052,636
_1741
Echvi_1742: Echvi_1742 - Uncharacterized protein conserved in archaea, at 2,052,633 to 2,053,076
_1742
Echvi_1743: Echvi_1743 - alpha-L-glutamate ligases, RimK family, at 2,053,073 to 2,053,981
_1743
Echvi_1744: Echvi_1744 - porphobilinogen deaminase, at 2,053,981 to 2,054,916
_1744
Echvi_1745: Echvi_1745 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 2,054,918 to 2,055,763
_1745
Position (kb)
2053
2054 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2052.611 kb on + strand at 2052.989 kb on - strand, within Echvi_1742 at 2053.022 kb on - strand, within Echvi_1742 at 2053.031 kb on - strand, within Echvi_1742 at 2053.031 kb on - strand, within Echvi_1742 at 2053.067 kb on + strand at 2053.067 kb on + strand at 2053.086 kb on + strand at 2053.109 kb on + strand at 2053.220 kb on + strand, within Echvi_1743 at 2053.286 kb on + strand, within Echvi_1743 at 2053.286 kb on + strand, within Echvi_1743 at 2053.500 kb on + strand, within Echvi_1743 at 2053.597 kb on + strand, within Echvi_1743 at 2053.765 kb on + strand, within Echvi_1743 at 2053.765 kb on + strand, within Echvi_1743 at 2053.765 kb on + strand, within Echvi_1743 at 2053.819 kb on + strand, within Echvi_1743 at 2054.895 kb on + strand at 2054.907 kb on + strand at 2054.907 kb on + strand at 2054.907 kb on + strand at 2054.915 kb on - strand at 2054.927 kb on + strand at 2054.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM remove 2,052,611 + -1.0 2,052,989 - Echvi_1742 0.80 -0.8 2,053,022 - Echvi_1742 0.88 -2.0 2,053,031 - Echvi_1742 0.90 +1.1 2,053,031 - Echvi_1742 0.90 -0.6 2,053,067 + +0.3 2,053,067 + -2.1 2,053,086 + -2.0 2,053,109 + -3.6 2,053,220 + Echvi_1743 0.16 -1.2 2,053,286 + Echvi_1743 0.23 -0.6 2,053,286 + Echvi_1743 0.23 -0.9 2,053,500 + Echvi_1743 0.47 -2.4 2,053,597 + Echvi_1743 0.58 -0.9 2,053,765 + Echvi_1743 0.76 -2.7 2,053,765 + Echvi_1743 0.76 -2.6 2,053,765 + Echvi_1743 0.76 -0.6 2,053,819 + Echvi_1743 0.82 +1.5 2,054,895 + -2.2 2,054,907 + -2.4 2,054,907 + -2.0 2,054,907 + +1.8 2,054,915 - +0.4 2,054,927 + -2.5 2,054,927 + -2.0
Or see this region's nucleotide sequence