Experiment: m.b. Nickel (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0177 and Echvi_0178 are separated by 2 nucleotides Echvi_0178 and Echvi_0179 are separated by 465 nucleotides Echvi_0179 and Echvi_0180 are separated by 50 nucleotides
Echvi_0177: Echvi_0177 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 193,524 to 195,848
_0177
Echvi_0178: Echvi_0178 - Bacteroidetes-specific putative membrane protein, at 195,851 to 196,819
_0178
Echvi_0179: Echvi_0179 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 197,285 to 197,680
_0179
Echvi_0180: Echvi_0180 - transcription elongation factor GreA, at 197,731 to 198,204
_0180
Position (kb) 195
196
197 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 194.870 kb on + strand, within Echvi_0177 at 194.875 kb on + strand, within Echvi_0177 at 194.875 kb on + strand, within Echvi_0177 at 194.887 kb on + strand, within Echvi_0177 at 194.888 kb on - strand, within Echvi_0177 at 194.888 kb on - strand, within Echvi_0177 at 194.932 kb on + strand, within Echvi_0177 at 194.932 kb on + strand, within Echvi_0177 at 194.959 kb on + strand, within Echvi_0177 at 195.002 kb on - strand, within Echvi_0177 at 195.008 kb on - strand, within Echvi_0177 at 195.013 kb on + strand, within Echvi_0177 at 195.013 kb on + strand, within Echvi_0177 at 195.036 kb on - strand, within Echvi_0177 at 195.036 kb on - strand, within Echvi_0177 at 195.036 kb on - strand, within Echvi_0177 at 195.046 kb on + strand, within Echvi_0177 at 195.049 kb on + strand, within Echvi_0177 at 195.050 kb on - strand, within Echvi_0177 at 195.145 kb on - strand, within Echvi_0177 at 195.170 kb on + strand, within Echvi_0177 at 195.171 kb on - strand, within Echvi_0177 at 195.200 kb on + strand, within Echvi_0177 at 195.201 kb on - strand, within Echvi_0177 at 195.215 kb on + strand, within Echvi_0177 at 195.226 kb on + strand, within Echvi_0177 at 195.234 kb on + strand, within Echvi_0177 at 195.238 kb on + strand, within Echvi_0177 at 195.239 kb on - strand, within Echvi_0177 at 195.259 kb on + strand, within Echvi_0177 at 195.260 kb on - strand, within Echvi_0177 at 195.275 kb on - strand, within Echvi_0177 at 195.300 kb on + strand, within Echvi_0177 at 195.309 kb on + strand, within Echvi_0177 at 195.310 kb on - strand, within Echvi_0177 at 195.352 kb on + strand, within Echvi_0177 at 195.357 kb on - strand, within Echvi_0177 at 195.383 kb on + strand, within Echvi_0177 at 195.384 kb on - strand, within Echvi_0177 at 195.384 kb on - strand, within Echvi_0177 at 195.410 kb on + strand, within Echvi_0177 at 195.411 kb on - strand, within Echvi_0177 at 195.459 kb on - strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.465 kb on - strand, within Echvi_0177 at 195.465 kb on - strand, within Echvi_0177 at 195.465 kb on - strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.476 kb on + strand, within Echvi_0177 at 195.494 kb on + strand, within Echvi_0177 at 195.519 kb on + strand, within Echvi_0177 at 195.519 kb on + strand, within Echvi_0177 at 195.600 kb on + strand, within Echvi_0177 at 195.710 kb on + strand at 195.710 kb on + strand at 195.712 kb on + strand at 195.712 kb on + strand at 195.713 kb on - strand at 195.727 kb on - strand at 195.727 kb on - strand at 195.727 kb on - strand at 195.731 kb on + strand at 195.731 kb on + strand at 195.731 kb on + strand at 195.733 kb on + strand at 195.733 kb on + strand at 195.733 kb on + strand at 195.734 kb on - strand at 195.820 kb on - strand at 195.824 kb on + strand at 195.825 kb on - strand at 195.825 kb on - strand at 195.829 kb on - strand at 195.829 kb on - strand at 195.897 kb on + strand at 195.897 kb on + strand at 195.898 kb on - strand at 195.898 kb on - strand at 195.934 kb on + strand at 195.935 kb on - strand at 195.955 kb on + strand, within Echvi_0178 at 195.955 kb on + strand, within Echvi_0178 at 195.955 kb on + strand, within Echvi_0178 at 195.956 kb on - strand, within Echvi_0178 at 195.956 kb on - strand, within Echvi_0178 at 195.963 kb on + strand, within Echvi_0178 at 195.974 kb on + strand, within Echvi_0178 at 195.974 kb on + strand, within Echvi_0178 at 196.009 kb on + strand, within Echvi_0178 at 196.107 kb on + strand, within Echvi_0178 at 196.108 kb on - strand, within Echvi_0178 at 196.139 kb on - strand, within Echvi_0178 at 196.139 kb on - strand, within Echvi_0178 at 196.228 kb on - strand, within Echvi_0178 at 196.228 kb on - strand, within Echvi_0178 at 196.246 kb on - strand, within Echvi_0178 at 196.253 kb on + strand, within Echvi_0178 at 196.279 kb on + strand, within Echvi_0178 at 196.327 kb on + strand, within Echvi_0178 at 196.327 kb on + strand, within Echvi_0178 at 196.331 kb on - strand, within Echvi_0178 at 196.343 kb on + strand, within Echvi_0178 at 196.349 kb on + strand, within Echvi_0178 at 196.349 kb on + strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.354 kb on + strand, within Echvi_0178 at 196.364 kb on + strand, within Echvi_0178 at 196.406 kb on + strand, within Echvi_0178 at 196.420 kb on + strand, within Echvi_0178 at 196.426 kb on - strand, within Echvi_0178 at 196.437 kb on + strand, within Echvi_0178 at 196.506 kb on + strand, within Echvi_0178 at 196.506 kb on + strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.579 kb on + strand, within Echvi_0178 at 196.656 kb on + strand, within Echvi_0178 at 196.657 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.687 kb on - strand, within Echvi_0178 at 196.687 kb on - strand, within Echvi_0178 at 196.708 kb on + strand, within Echvi_0178 at 196.709 kb on - strand, within Echvi_0178 at 196.709 kb on - strand, within Echvi_0178 at 196.724 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.727 kb on - strand at 196.728 kb on + strand at 196.728 kb on + strand at 196.729 kb on - strand at 196.766 kb on + strand at 196.853 kb on + strand at 197.003 kb on + strand at 197.003 kb on + strand at 197.011 kb on + strand at 197.011 kb on + strand at 197.274 kb on - strand at 197.296 kb on + strand at 197.296 kb on + strand at 197.297 kb on - strand at 197.315 kb on + strand at 197.315 kb on + strand at 197.316 kb on - strand at 197.344 kb on + strand, within Echvi_0179 at 197.350 kb on + strand, within Echvi_0179 at 197.351 kb on - strand, within Echvi_0179 at 197.426 kb on + strand, within Echvi_0179 at 197.449 kb on + strand, within Echvi_0179 at 197.450 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.543 kb on + strand, within Echvi_0179 at 197.544 kb on - strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.555 kb on - strand, within Echvi_0179 at 197.558 kb on + strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.711 kb on - strand at 197.732 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.782 kb on + strand, within Echvi_0180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM remove 194,870 + Echvi_0177 0.58 +0.2 194,875 + Echvi_0177 0.58 -1.4 194,875 + Echvi_0177 0.58 +0.3 194,887 + Echvi_0177 0.59 -1.3 194,888 - Echvi_0177 0.59 +0.5 194,888 - Echvi_0177 0.59 -0.9 194,932 + Echvi_0177 0.61 +0.3 194,932 + Echvi_0177 0.61 +0.9 194,959 + Echvi_0177 0.62 -0.1 195,002 - Echvi_0177 0.64 +0.1 195,008 - Echvi_0177 0.64 +0.6 195,013 + Echvi_0177 0.64 +0.6 195,013 + Echvi_0177 0.64 -0.2 195,036 - Echvi_0177 0.65 -0.5 195,036 - Echvi_0177 0.65 -1.4 195,036 - Echvi_0177 0.65 +0.6 195,046 + Echvi_0177 0.65 -0.8 195,049 + Echvi_0177 0.66 -0.5 195,050 - Echvi_0177 0.66 -2.6 195,145 - Echvi_0177 0.70 +0.0 195,170 + Echvi_0177 0.71 -0.4 195,171 - Echvi_0177 0.71 +0.4 195,200 + Echvi_0177 0.72 +1.1 195,201 - Echvi_0177 0.72 -0.5 195,215 + Echvi_0177 0.73 -0.6 195,226 + Echvi_0177 0.73 -0.8 195,234 + Echvi_0177 0.74 -1.0 195,238 + Echvi_0177 0.74 -1.1 195,239 - Echvi_0177 0.74 +0.8 195,259 + Echvi_0177 0.75 -1.2 195,260 - Echvi_0177 0.75 -1.5 195,275 - Echvi_0177 0.75 +1.2 195,300 + Echvi_0177 0.76 -1.2 195,309 + Echvi_0177 0.77 -0.3 195,310 - Echvi_0177 0.77 +0.3 195,352 + Echvi_0177 0.79 -0.3 195,357 - Echvi_0177 0.79 +0.5 195,383 + Echvi_0177 0.80 +0.6 195,384 - Echvi_0177 0.80 +0.4 195,384 - Echvi_0177 0.80 -0.4 195,410 + Echvi_0177 0.81 -0.2 195,411 - Echvi_0177 0.81 +1.2 195,459 - Echvi_0177 0.83 -0.5 195,464 + Echvi_0177 0.83 +0.4 195,464 + Echvi_0177 0.83 +0.7 195,464 + Echvi_0177 0.83 -0.8 195,464 + Echvi_0177 0.83 +0.7 195,464 + Echvi_0177 0.83 -0.6 195,464 + Echvi_0177 0.83 -0.8 195,465 - Echvi_0177 0.83 -0.1 195,465 - Echvi_0177 0.83 -1.4 195,465 - Echvi_0177 0.83 +0.7 195,466 + Echvi_0177 0.84 -0.3 195,466 + Echvi_0177 0.84 +0.3 195,466 + Echvi_0177 0.84 +1.1 195,466 + Echvi_0177 0.84 -1.0 195,476 + Echvi_0177 0.84 +0.2 195,494 + Echvi_0177 0.85 -2.6 195,519 + Echvi_0177 0.86 -0.8 195,519 + Echvi_0177 0.86 -0.0 195,600 + Echvi_0177 0.89 -0.3 195,710 + -0.5 195,710 + +1.1 195,712 + -1.5 195,712 + +1.3 195,713 - +1.3 195,727 - +0.7 195,727 - -0.5 195,727 - +0.4 195,731 + -0.2 195,731 + -0.4 195,731 + +0.7 195,733 + -1.0 195,733 + -0.4 195,733 + +0.2 195,734 - +0.3 195,820 - +1.4 195,824 + -1.0 195,825 - +0.7 195,825 - -1.9 195,829 - -0.3 195,829 - +1.3 195,897 + -2.1 195,897 + +0.0 195,898 - +1.0 195,898 - -0.7 195,934 + +1.4 195,935 - +1.0 195,955 + Echvi_0178 0.11 +0.7 195,955 + Echvi_0178 0.11 -0.7 195,955 + Echvi_0178 0.11 +0.5 195,956 - Echvi_0178 0.11 +0.7 195,956 - Echvi_0178 0.11 -0.6 195,963 + Echvi_0178 0.12 -0.7 195,974 + Echvi_0178 0.13 +1.2 195,974 + Echvi_0178 0.13 +0.3 196,009 + Echvi_0178 0.16 +0.0 196,107 + Echvi_0178 0.26 -1.3 196,108 - Echvi_0178 0.27 -0.1 196,139 - Echvi_0178 0.30 +2.0 196,139 - Echvi_0178 0.30 -2.2 196,228 - Echvi_0178 0.39 -1.0 196,228 - Echvi_0178 0.39 -0.2 196,246 - Echvi_0178 0.41 -1.1 196,253 + Echvi_0178 0.41 +1.7 196,279 + Echvi_0178 0.44 +0.8 196,327 + Echvi_0178 0.49 -0.3 196,327 + Echvi_0178 0.49 -2.1 196,331 - Echvi_0178 0.50 +0.4 196,343 + Echvi_0178 0.51 -1.3 196,349 + Echvi_0178 0.51 +0.0 196,349 + Echvi_0178 0.51 +0.4 196,350 - Echvi_0178 0.51 +1.1 196,350 - Echvi_0178 0.51 +0.8 196,350 - Echvi_0178 0.51 -0.8 196,354 + Echvi_0178 0.52 +0.1 196,364 + Echvi_0178 0.53 +1.2 196,406 + Echvi_0178 0.57 -0.2 196,420 + Echvi_0178 0.59 +0.9 196,426 - Echvi_0178 0.59 +2.9 196,437 + Echvi_0178 0.60 +0.1 196,506 + Echvi_0178 0.68 -1.2 196,506 + Echvi_0178 0.68 -0.6 196,507 - Echvi_0178 0.68 +2.5 196,507 - Echvi_0178 0.68 +1.1 196,507 - Echvi_0178 0.68 +0.1 196,579 + Echvi_0178 0.75 -0.2 196,656 + Echvi_0178 0.83 +2.3 196,657 - Echvi_0178 0.83 +0.9 196,672 - Echvi_0178 0.85 -0.5 196,672 - Echvi_0178 0.85 -0.1 196,672 - Echvi_0178 0.85 +0.4 196,687 - Echvi_0178 0.86 +0.6 196,687 - Echvi_0178 0.86 +0.9 196,708 + Echvi_0178 0.88 -0.4 196,709 - Echvi_0178 0.89 -0.3 196,709 - Echvi_0178 0.89 +0.0 196,724 + -2.1 196,726 + +0.4 196,726 + +0.9 196,727 - -0.1 196,728 + +0.2 196,728 + -1.2 196,729 - -0.4 196,766 + -0.8 196,853 + +1.1 197,003 + +1.7 197,003 + -0.5 197,011 + +0.3 197,011 + -1.9 197,274 - -1.6 197,296 + -0.1 197,296 + -0.2 197,297 - +0.2 197,315 + -0.9 197,315 + +1.1 197,316 - -1.3 197,344 + Echvi_0179 0.15 -0.5 197,350 + Echvi_0179 0.16 +0.6 197,351 - Echvi_0179 0.17 +0.1 197,426 + Echvi_0179 0.36 -0.8 197,449 + Echvi_0179 0.41 +1.8 197,450 - Echvi_0179 0.42 +0.3 197,539 - Echvi_0179 0.64 +0.7 197,539 - Echvi_0179 0.64 -1.4 197,543 + Echvi_0179 0.65 +0.8 197,544 - Echvi_0179 0.65 +3.1 197,554 + Echvi_0179 0.68 -1.3 197,554 + Echvi_0179 0.68 -0.6 197,555 - Echvi_0179 0.68 +0.2 197,558 + Echvi_0179 0.69 +0.6 197,633 - Echvi_0179 0.88 +1.2 197,633 - Echvi_0179 0.88 +0.5 197,711 - -0.3 197,732 + -0.0 197,739 + +0.8 197,739 + -0.2 197,739 + -0.4 197,782 + Echvi_0180 0.11 +0.6
Or see this region's nucleotide sequence