Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_R0082

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03637 and CCNA_R0082 are separated by 56 nucleotidesCCNA_R0082 and CCNA_R0083 are separated by 63 nucleotidesCCNA_R0083 and CCNA_R0084 are separated by 98 nucleotides CCNA_03637: CCNA_03637 - triphosphate tunnel metalloenzyme family protein, at 3,790,745 to 3,792,274 _03637 CCNA_R0082: CCNA_R0082 - tRNA-Met, at 3,792,331 to 3,792,407 _R0082 CCNA_R0083: CCNA_R0083 - 5S ribosomal RNA, at 3,792,471 to 3,792,588 _R0083 CCNA_R0084: CCNA_R0084 - 23S ribosomal RNA, at 3,792,687 to 3,795,479 _R0084 Position (kb) 3792 3793Strain fitness (log2 ratio) -1 0 1 2at 3791.352 kb on + strand, within CCNA_03637at 3791.685 kb on - strand, within CCNA_03637at 3791.725 kb on - strand, within CCNA_03637at 3791.759 kb on - strand, within CCNA_03637at 3791.907 kb on - strand, within CCNA_03637at 3791.992 kb on + strand, within CCNA_03637at 3792.086 kb on + strand, within CCNA_03637at 3792.086 kb on + strand, within CCNA_03637at 3792.086 kb on + strand, within CCNA_03637at 3792.094 kb on - strand, within CCNA_03637at 3792.096 kb on + strand, within CCNA_03637at 3792.096 kb on + strand, within CCNA_03637at 3792.104 kb on - strand, within CCNA_03637at 3792.107 kb on + strand, within CCNA_03637at 3792.126 kb on + strandat 3792.131 kb on + strandat 3792.142 kb on - strandat 3792.376 kb on - strand, within CCNA_R0082at 3792.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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3,791,352 + CCNA_03637 0.40 +0.1
3,791,685 - CCNA_03637 0.61 -0.6
3,791,725 - CCNA_03637 0.64 -0.5
3,791,759 - CCNA_03637 0.66 -0.3
3,791,907 - CCNA_03637 0.76 +0.4
3,791,992 + CCNA_03637 0.82 -0.0
3,792,086 + CCNA_03637 0.88 +0.2
3,792,086 + CCNA_03637 0.88 +1.4
3,792,086 + CCNA_03637 0.88 -0.1
3,792,094 - CCNA_03637 0.88 +0.0
3,792,096 + CCNA_03637 0.88 -0.3
3,792,096 + CCNA_03637 0.88 -0.3
3,792,104 - CCNA_03637 0.89 +2.2
3,792,107 + CCNA_03637 0.89 +0.1
3,792,126 + +0.2
3,792,131 + +0.1
3,792,142 - -0.6
3,792,376 - CCNA_R0082 0.58 +0.1
3,792,618 - -1.1

Or see this region's nucleotide sequence